RNA id: XM_043257734.1


Basic Information

Item Value
RNA id XM_043257734.1
length 4235
RNA type mRNA
GC content 0.45
exon number 18
gene id LOC122357989
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 28929703 ~ 28941914 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGTCGGTCATGAATAGCTGATTCTCGCTCAGTAGCAGCACACATCTAAAGGGTGAAGACTGAATAACGGACGAGAACAGTGgaaaagaaggagagaaaatAGTGGAACGTCTCCGACCGCGTGGATTAAGACAAACAGAGCAGAACCAAGAGTGAAAGACGAGAAGGTCCCAGGGAGGAATCATCTGGGACACTGTCTGGAAACTTTAGAAAAAGAGACAGTGATCTATTTTAAAGAGCTTTTTATCAGACAGAGGAGAGCCGAGGAGGAGACCGCATTCAAAGTCCTGAAGGATATAAAGTGAAAGTCGGGCACGGGTTTACTGGAATACAGATTCATATCATAAACAACTGGCAGCAGTTACGGTGTTTCCAAACATGGAGCTGAAGCGGGCACTTCTTCTTTTGGCTCTGTTCCTGGAGTTTAGTGACTCTCATAAATGTGACATTGGACACGATAGAAGAAACAACAGCTGTATTGATACAGATGAGTGTGTGATGATTCCAGATGTGTGTGGAGCACACGCTCAGTGTTTTAATACACATGGAAGTTACTACTGCACCTGCAATGAAGGCTTTCAGTCAAAAACAGCCAACTTCACAGCAATAACGGGAGAGTGCGAGGATATCAATGAGTGTTTCATGAACACACATGGATGCTCAGATGATAAGGTGTGTATGAACACTGTAGGCTCCTACGAATGCAGGTGTAGAAATGGATACCGGCTCACAAGAACGGACGCAGGATGTGAAGATGTGGATGAGTGTTTGTCCTCGGTGTGCGGAGTTCACAGCGTCTGTTTAAACACACCAGGCAGTTTCTTCTGCAACTGTTCTTCTGGGTTTCACAAACATGAGAACGACTCGTGTACAGACATCAATGAGTGTATAAATCCAGATGTTTGTGGCAGAAACGCACAGTGCAACAATACTTTCGGCAGCTACACCTGCAAATGTGACCAGGGTTACAGTAACTACGGCAACAACCAGTCAGAATGCATCGAGATGAGCTGCGACCTCTTTGAGTCTGACGCAGAGTCGCCTGGAAAGTTGAAGAACTTACTGGAGCTGTTGAGGAGCAGCTGTGAGTCTCTGCACGGTCCAGACGGTCACGGTCTGACGGGAGAGCAGTTACTGGAGAATGTGTTCACCACCACCGACGAGCTGCTGTTGGATGGAAAGATTGCTGGCGGCGAGATGTTGAGTCAGTTTCTGGACGCGGTGGAGAACAGCATGCGTCTGATCGGACCTCAGCTGAGAGAACCTGTGACCAGGATGGAGACGCACAACACCTTCGCTGAGGTTGCAGTCGCACGGAATCAGACTCCGCCCAGTGGGCATGTCACTCTGAGTGCAGGCTCCGCCCACTTTGAAACCAGCTGGGAAACAGTTGTAGGGAAATCATATCCAGGTTTTGCGTTTGTGGCTCTGGTCGGTTATAAAGATTTGAACACAAGTGGTCTGCTCCATAATGTCAACAGTGAGAAACCAGACGATGAAGAGAGAAGCGTCACTTATCAGCTCAACTCTGAAGTGGTGACGGCTGTCGTCAGTAACACAGAAACCAAACATCTGTCAGAGCCGGTGACGCTCGTCTTTACACACGTGGAGGACAGGGCGGAGTCTGGGGGCGTGGCTTACTCCTGTGTGTACTGGAATGAGTATGAGGGGGCGTGGTCTAATGAGGGCTGTGTGAGGGCGGAGTCTAACAGCACTCACACAGTGTGCTCCTGCTCTCATCTCAGTAGCTTTGCTGTGCTGATGGCTCTCTATCCTCTCCAGGACTCGTTTGAGTTGGTGTTGATCACTCGTGTGGGTTTAGTTCTGTCTCTggtctgtttgtttctctgtatCTTGACGTTCAAGTTCTGCCGCTCCATTAAAGGAACCCGGACCAGCATCCACCTCCATCTGAGCATCTGTCTCTTCATCGCAGACCTCGTCTTCCTCTGTGGGATCTCCAGCACCCAGAATAAAgTAGGGTGTGGGATTGTGGCCGGTCTGCttcatttcttcttcttgtctGCGTTCTGCTGGATGCTGCTGGAGGGGGTTCAGCTCTACAGGATGGTTGTGCTGGTGTTTCACACCACATTAAAACATCTCTACATGTGTTTGGTGGGATACGGAGTCCCTCTCGTCATCGTCATCATCTCTGCCATCTCCTTCTCAAAGGGATACGGCACCGATagacaCTGTTGGCTTTCTCTTGACGGTTCTTTCATATGGAGCTTCTTTGCGCCAGTCTGCATCATCGTCATCCTTAACAGCTTTGTCTTCATCATCACAGTCTGGAAACTGGCTGAAAAGTTTGCCAGCCTCAATCCAGACCTCTCCAAACTCCGCAACATCAGGGGGTTTACGGTGACCGCCGTGGCTCAGATGTGTGTTCTTGGAGGGATGTGGGTTTTCGGCTGCTTCCTCTTCCAGGAAGAAGGAACTCAAGTTGCGTTGTACCTCTTCACCATCTTAAACAGCCTCCAGGGGGCGCTCATCTTCTTCATGCACTGCCTCCTGTCCAAACCGGTCAGAGAAGAGTACTGCAAGCTGATTACTAGGATCTGCTCACGGAAGGAGAAGAAATATTCAGAATTCAGCACCAATCAGTCCAGCAACAGTCAGCAACCTCTACGGAGCAATCAGACCACAGGAGAGTCCAAGATATAGAGCGGCGGTCAGTCCTGGAGGATCCTTCTAGATGTTTGACCTTTACAGATGTCTTACAGAGCTTTTATCCTGCGGCACAAGGGACTCCTCGCCATCGAAGGATCTGCGactgctttctttctctctgttaaGCAAGAATTTCAGGTCTCGACTCATCACACGACCTAGATGCAAAGCATATTGGCTAAAACAGATCAATCAATTACAGCTGTAGTGccgttttctttgtttaatggACTTTGGAGGCACTTCGGCTGTTCTTTATCGTGCCTTTAGGTGGAAAACGTCTTATATTACATGTAAAAGGCAGCTTTTATTTGCTTATATGTGAAAATGTTGTGAAGATATCTGAAGAACTCACCTCCGATCTGCCTTACGAAAGAGGTTGTGTTCTCTGAAGCCTTTTAGTCGATTATCAATCacaaaacattgtgtttttataatctGCACTTACATGCCACTTTACGTCTTTAAGCTGTTTGGAAAGAGATGAGAGGTACTTGAttcataaagatattttaatcgTGCCAGCCACAGAGCAGGTGACAAATACAGCGTAACAAATGAAAATACCGTTCCTGATACTATAATATCACAGAGAGATAAACAGATTTAGCATTTGTCCAATTAGTTTTCACAGATGGATGCAAATAAACAGCGAAATGCACCTTTAGATTGATCTTCCTGAAACCCTGAGTATACTTTGGTTTTTACACAAAAAGCTTTGAGGGAGAACAGAACCAATTGCATTGcaaaatgattcagtgtttAGAAGCGCAAGAAACAGCTGGTCAGTACAGCGTAAACGCAACGGAAACCCAGGCCAAACAAACATTGCAAAGACAAATGAGATTAACCAATCACCTAATAAACAAAACCAATAAAAGATGATAAACTGCTATTTTTCCTTGCAATTTCATAAACGTCATAGACACAAGTTCAGTGGCTCTGAATCGGAAACCACCGAAATGTCTAAATATTTAGATGTGAAATCATGTAACTCTGGCAGTCTGGTACTCGCTCTGAACCGCTGTGtccaaacaaatgaacaaaacgtTTCAATAATTTATTGAGCAGTATTTCTAAAGAGGCCATAAAAACTCTTCTTCAGAGAAGATTCACACAATCTTCTGCGTTCAGTTTTAAAGAGTATACACAAGTTTTTTGGTCAtctggggcctcatttataaagcgtGTGTACGCTCCCATTTGACCGTAGAGTGCTGTACGCTTAAATCCCTAAATCATATTtatgaaaaaccttttttctcagAACGAAAGCATAGTTCGGGCTTTAGTTTTGAGAACAATGTGATTTTGTAAGAAGACAAATCGAATGCAAACGTTTTAAACTCCTTGCTTCTGCGATGCATTTGTTCTGACTATCTCTCTATTGTATGTGTAATGAAATATGATAagacacaaatgttttattttacacatagGTTTTGTATCTTTTGTAGAAAAGGTTTTTTGCTGTTACTTTTGTACTTGAAATAAGGGTAAATTTTGGCCCTGATGTGGTACTGCTATGTTTttcaacaaatattaaattactgCTAAGAGAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function

KEGG:

id description
K08446 ADGRE5, CD97; CD97 antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11133 lncRNA downstream 121997 28743444 ~ 28807706 (-) True G7541
TU11146 lncRNA downstream 128038 28792644 ~ 28801665 (-) True G7551
TU11145 lncRNA downstream 128847 28790466 ~ 28800856 (-) True G7550
TU11130 lncRNA downstream 136112 28743444 ~ 28793591 (-) False G7541
TU11132 lncRNA downstream 145604 28743444 ~ 28784099 (-) False G7541
TU11154 lncRNA upstream 2084 28943997 ~ 28944618 (-) False LOC122324333
TU11205 lncRNA upstream 29981 28971894 ~ 28981118 (-) True G7579
TU11218 lncRNA upstream 73752 29015665 ~ 29017156 (-) True G7591
TU11223 lncRNA upstream 126069 29067982 ~ 29134568 (-) False LOC122362981
TU11231 lncRNA upstream 126069 29067982 ~ 29152545 (-) False LOC122362981
XM_043260208.1 mRNA downstream 1123 28924616 ~ 28928580 (-) True LOC122359935
XM_043257929.1 mRNA downstream 5199 28914998 ~ 28924504 (-) True LOC122358117
XM_043220034.1 mRNA downstream 15845 28899713 ~ 28913858 (-) True LOC122325105
XM_043245603.1 mRNA downstream 30968 28893141 ~ 28898735 (-) True LOC122349524
XM_043254493.1 mRNA downstream 88168 28809214 ~ 28841535 (-) False LOC122355940
XM_043218715.1 mRNA upstream 1075 28942988 ~ 28944610 (-) True LOC122324333
XM_043261792.1 mRNA upstream 14394 28956307 ~ 28961850 (-) True LOC122360916
XM_043216835.1 mRNA upstream 95809 29037722 ~ 29043291 (-) True LOC122323133
XM_043219713.1 mRNA upstream 108861 29050774 ~ 29061674 (-) False dnm2b
XM_043219627.1 mRNA upstream 108861 29050774 ~ 29061674 (-) True dnm2b
TU11106 other downstream 404152 28523705 ~ 28525551 (-) True G7527
TU11094 other downstream 483112 28406182 ~ 28446591 (-) True G7515
TU11081 other downstream 537650 28391039 ~ 28392053 (-) True G7508
TU11020 other downstream 681180 28244128 ~ 28248523 (-) True G7475
TU10496 other downstream 853259 28074648 ~ 28076444 (-) False LOC122349330
TU11178 other upstream 107830 29049743 ~ 29128775 (-) False G7563
TU11179 other upstream 107830 29049743 ~ 29128775 (-) True G7563
TU11196 other upstream 164401 29106314 ~ 29112734 (-) True LOC122325037
TU11164 other upstream 184858 29126771 ~ 29128775 (-) False G7563
TU11174 other upstream 184858 29126771 ~ 29128775 (-) False G7563

Expression Profile