RNA id: XM_043258250.1


Basic Information

Item Value
RNA id XM_043258250.1
length 2567
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC122358417
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 29799978 ~ 29806220 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAATGATGCAACAGAAGACACACTGAAAGATGTTTGAACAGGAAAAGGAAAGGACTTTGGACAGTTTTCCCAAGTTAATGAGAGAACCTCATATCCTTCTTATAAAACACTGTTAGCTGACTCAAGTTCTGCTCTCACCGAGCTCTAGAAGCCCGAAGCTCATTATACCATGTCTTATTCTTCAGTGTAACTTATAGTTACTTACTTTTTTCATCTCATACTTCATGAAGTTTCTCCTTTTACATTTTGGTTAAATTAAAAGGATTTGCAAAATTTGGACTTTTTGGACCGAAGGTTCCTCTgtgAAGTGAATCGTTGAAGGACGATGGCATGTGTTAAAGAGCTGCTCGTAAACCCACTGAAGGATCTGGTTAAGGATGATCTAAAAGAGTTTCGGTGGCACTTGAAGAATTATGAGGGTGTTTCAGCTTCTGAGATGGAGAATGCAGATGTCTTAGACACAGTAGATAAAATGATGGCACTTTTTGGAGAAAAAGAAGCTGTTGAGATCACAATTAACATCCTGAAGAAGATGAACCAGAATCTTCTGGTTGAAGAGATAGAGAACCAATACATCAGAGTCTCAACTCCTAAAGTTGCTGATACAGCTGATTACAGAGAGATCAGTCTCAGGCTGAAGAACAGATTACAAGAAGACTATAATCGGATATTGATTGGTAATTCACAAACGGGTCATCAGAAATATCTGAACGATATTTACACTGATCTATACGTGGTGGAGAACGAGACTGGAGGAATAGTGAATGACCACGAGGTGAGACGCATTCAACTGAACATCCACCACGTTACTGTGAAGAACACCACAATCTTGTGCAATGATCTGTTCAAAGTTCAGCATGATGATGGtcgacaaaacaaaaaagtgttaACAATGGGGATTGCTGGGGTGGGAAAAACTGTCTCTGTCAATAAGTTCATTCTTGACTGGGCTGAAGAAAAGGAAAATCAGGACATTCTCTTCATATTTCCACTCCCATTCCGTAGACTGAATATGATTACAAAGGACTGCAGTCTCATGGAACTGCTTCACGAATGCTTCTTTAGTGATCCTCAAGAGCTACCCTTACTTCCTAAGGATGACTGTAAGGTCATGTTCATTTTCGATGGGCTGGATGAATGTCGCTTCCCTTTGAGATTTCATGATTGTGATAGATTAATGGATGTGCATGAAAAAACAACTGTGAGTCAGATAGTAACAAACCTGATCAAAAGGAATCTGGTTTcgtctgctctcatctggatcacatccagaccagcagcagccggTCTGATACCCAGAGACCACATTGATCAGGTGACAGAAGTGCGAGGATTCAACGATGAGCAAAAAGAGcaatatttcatcaaaaacagcaGTCTTGAGCTTGCCGGAAACATCATGCGTCACATCAGAAAATCAAGGAGTCTgtacatcatgtgccacatccctCTTTTCTGCTGGATCTCTCTCACTGTTCTTCAGCCTCTGCTGGCTCGAGAGAGCAATGACAAAACTCCTACAACTCTCACAGAGATGTACACAGCCTTCTTGCTTTCTCAGAAGcaacagatggaaaaaaaatacagtgataaTCCTGAACTTAGGTTAGAAGCCAGATGCTTTGATAAGATTGTCCTGAAGCTTGGGAAACTGGCCTTTAAACAGCTGGAGAAAGGAAATCTGATTTTCTACAAAGAAGATCTTGAGGAGTGTGGACTAGATGTCAGTGAAGGGTCGGTGTACTCTGGATTATGCACTCAGATCTTTCAGGAGGAAAAGGCTGTTTCagccaaaaacatttacagcttTGTACATCTCAGTGTCCAGGAGTTCCTTGCTGCTCTCTATGTGTTTTTGATTTACAAAgatgagaaatcaaacctattttTTCACACATGGAAAAAGACAATATCATGGAAACTTTCTAACAGGCCACTGTTTCATCTTCTGAAGTCTGCAGTCAACAAGGCATTACAAAGTGAGAATGGACACCTGGACCTTTTCCTCCGGTTTCTCTTGGGTCTCTCATTGGAGTCCAATCAGAATGACTTGAAGGAACTGCTGCCAGAAGTGGAACTGAAaactatgaatattaaaaacaccGTTGACTATATAAAACAGACAATAGAGAAGGAGAAATCAGCGGAGAGGACAATCAATCTGTTCTTCTGCCTAAGTGAACTGAAATATGACTTTGTAAGTGATATCCAGAAGAACCTGAGCTCTGGAAATCTTTCAGCACAGAATCTGTCCTCTGCTCAGTGGTCAGCTCTGGTGTATGTGCTGCTGATGTCAGAAAGCACTCAAGATAAGTTGGAACTGCAAAAATACAGAAGATCTGAAGAAGCACTGATGAGAATGTTGCCAGTGATCAAAAACACAAGAAGGGCACtGCTACAGTCCTGTAATCTCACTGTTGAGTGTTGTGGGAGTTTGTCGTTGGTGTTACAGTCCTCTATCCTGAGGGAGCTGgatctgagtaacaatgacctgcaggattcaggagtgaagctgctctccgatggactgaagagtccaaactgtcagcTGCAGATACTGAGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11448 lncRNA downstream 218851 29524195 ~ 29581127 (-) False G7675
TU11447 lncRNA downstream 218851 29577958 ~ 29581127 (-) True G7675
TU11467 lncRNA downstream 246392 29522899 ~ 29553586 (-) True G7686
TU11486 lncRNA downstream 250776 29547872 ~ 29549202 (-) True G7694
TU11459 lncRNA downstream 299281 29496887 ~ 29500697 (-) True G7683
TU11571 lncRNA upstream 80060 29886280 ~ 29886672 (-) True G7751
TU11576 lncRNA upstream 108448 29914668 ~ 29915054 (-) True G7755
TU11585 lncRNA upstream 212063 30018283 ~ 30018557 (-) True G7761
TU11590 lncRNA upstream 226350 30032570 ~ 30037959 (-) True G7764
XR_006251747.1 lncRNA upstream 291638 30097858 ~ 30099331 (-) True LOC122351377
XM_043218492.1 mRNA downstream 7741 29786585 ~ 29792237 (-) True LOC122324192
XM_043260095.1 mRNA downstream 205151 29589963 ~ 29594827 (-) False ears2
XM_043259981.1 mRNA downstream 205153 29589963 ~ 29594825 (-) True ears2
XM_043260020.1 mRNA downstream 205162 29589963 ~ 29594816 (-) False ears2
XM_043245650.1 mRNA downstream 276735 29519894 ~ 29523243 (-) True wfikkn1
XM_043265106.1 mRNA upstream 367 29806587 ~ 29808583 (-) True LOC122363120
XM_043218256.1 mRNA upstream 3154 29809374 ~ 29811519 (-) True LOC122324036
XM_043256992.1 mRNA upstream 16037 29822257 ~ 29832148 (-) False LOC122357555
XM_043257071.1 mRNA upstream 16037 29822257 ~ 29832080 (-) False LOC122357555
XM_043257155.1 mRNA upstream 16037 29822257 ~ 29832060 (-) False LOC122357555
TU11380 other downstream 323640 29475474 ~ 29476338 (-) False G7648
TU11406 other downstream 324590 29467125 ~ 29475388 (-) False G7655
TU11367 other downstream 326417 29457515 ~ 29473561 (-) False G7648
TU11666 other upstream 385981 30192201 ~ 30197848 (-) True G7816
unassigned_transcript_161 other upstream 551859 30358079 ~ 30358151 (-) True trnar-ucg_101
unassigned_transcript_162 other upstream 552175 30358395 ~ 30358466 (-) True trnaq-uug_9
unassigned_transcript_163 other upstream 553600 30359820 ~ 30359892 (-) True trnar-ucg_102
unassigned_transcript_164 other upstream 554386 30360606 ~ 30360678 (-) True trnaq-uug_10

Expression Profile