RNA id: XM_043258688.1


Basic Information

Item Value
RNA id XM_043258688.1
length 2446
RNA type mRNA
GC content 0.58
exon number 13
gene id akap8l
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 29197181 ~ 29203914 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCACACTCATTTGTGGGCGGAGTCGATGCGGCCTGATAGTCCCGAGCGCTTCGCACACAATCCCAGCGATCTTACACTGAAAACTGCTGCAAGATGGATCGAGGATATTCTTCAGGATTCTCTGGATGGGGAGGATCGGGTGGAGGAGGATCGTCCAGAGGCTCGAACAGCTACGACCTGTACGGGTATAAAGACTCCATGTCCGGCGGCGGCGGGTTCGGAGGAGGATACGGCTCCAGCGATCGCATGAAGAGAGGACTCTCCGGAGGAACCCTGCTGTCCTCCTCCGGCTCCAACGCCGACGCCGTCATCGCCAAGATCAACCAGCGGCTGGACATGCTGACGCAGCTGGAGGGAGGCATGAAGGGAGGCGGGCGCAGCGACAGGTTTGACCAATACGAGTCTTTCGACTCGCGCTCCGCCTCTCTCGGCCCCCGAGATCTCTACAGATCCGGTAGCTTCGGTTACAGCGACTCCCGGGGCGACATGATGGCCCAGCGCGGAGGCGTGGGCTTTGGGCTCATGGGCGGAGCCGGAGGGGGCAGTGGCTTTGACGGCTCCGCCTTCGGATCTGCCAAAATGCGGCAGACTCGAGACTCCGCCTTCTCGGGCTCCGGCTGGGGGGCGGGGCAGAGATCCCCACGCAGGAGCAGAGCGGCTGGGGGGCGGGGCTTCGGCCGCAGGCAGGACTCCTCCTCCGCCGCCGGCATGGGGGGAGGAAGTGGGCGGGGCGGAGGCCAAGGCCACTCCCCCGCAGGGCGAGGAAAGCTGCCCTCGCTCCTGGCCCATCGCATGTACCCCGACAGCGGGGCCTTCCAGTCTCACCGCGGGCCCCAGGACTTCCCTGCGCGGAACTTCGGAGGGGGCCCGAGGGCCAACCGGCAGCACGGCCGCAAGAGACCCATGAACCGACAAGTGAAAGGTCAGCGTGACGGGCAGAAGAAGAGGAAACAGACTCTGAGCGCGAACGACGAGCCCGAGCCCAAGATGGGAAAAACCGAAACCGTTGGGGAAACATCGGCCGCCGAGGCCACGGCAGGAGAACCGACGCAGGATTCTGAGGAACCGACTGCCGCCGTGGAGTACAAACCAGAAGACGGAGGAGAGAGTGCTGCGCCATCCAATCAGGACGCTTCCAAGGGGAAGAAGACTCCGCCCTCTGCAGCCAAAGTCAGGAAGAGGAGAGGCTTCTTTGAAAGGTCAGGGGTCAAAGTATCAGCACACAGGATGACGTTCGCCTGCTCCATCTGCAAGTTCCGCTCGTTCTACAGCGAGGACATGGCCGCCCACCTGGAGAGCAAGTTCCACAAGGACCACTTCAGGTTCCTGTCCAATCAGCTGTCGAAGCCCACCACCGACTTCCTGCAGGAATATCTGAATAACAAGTACAAGAAGACGGAGCAGCGAGTGAGTCAGATGGACAACCACAGCACCGTCATCTGCCAGGTGTTCAAAGAGCAGGATCTGACGCGAGATCTCGGCATGGAGCACTTCATGAAGAAGGTGGAGGCGGCTCACTGCTCGGCGTGCGACGTCTTCATTCCCATGCAGTACATGCTGATCCAGAAGCACCTCAAGTCACCCGACCACAACTACAATCGCAAGggtaTGATGGAGCAGTCCAAGAGGTCCAGTCTGTCCGTGGCACGCAGCATCCTCAACCACAAGGTCATCGGCAAGAAGCTGGAGAGCTACCTGAAGGGTGAAAACCCCTTCAACGGTAACCATGACGACCAGGATCCCGAGGACTCCATGGTGATGGAGGTTTCCGAGGCCGATCTCACCAACGAAAGCCTTCATGAGATCAAACAGGTAGAGGAGGAGGAGCCTGCGGTAGAGGAGGAGGAGCCTGCAGACGGAGCGGTCGGAAACGGGGAGGAGCACCTAGAGGTGAAGATGGAGGAGGGTGTGGAGGAGGGTGACGAGGGTGATGAAGGTGTGGAGGGTGTGGAGGTGGGCGAGGAGGAGGCGGCGGAGCACGGCGTGGACGCGGAGGAGGCGGAGCCAGGAGACACGCAGGCCGCTCCGGGCGAGTAATCATCAGGAGAACTGTCCACTACTGTCCGTCTGAAGAATCACTTCTACATACTAAACCTCTGAACTCTATGACAGCTGCCCGGGGTCAGGCCAGACATGCAGCCCGAGGACCAATCAGAATAAAGCCTGCCTCGTCTTCATCCAGTCACAGGATTGCTCCGCCCCTCTACGCCCGTGCGTTTCTTCTGATTAGATACACGCGTGTCATGTGACTGTTGATGTGCCTCTTGAGATGAATTCAGTTTGTCACGTCTTTACACGCTGAAgtaaaacctttttctttttttttttttttttttttttgtttctctcgTTTGTTTGGTTTGTTGCAGAAGAGGAATGCTTTCATTTGCAGTATCCGCtcattgtttttctcttgtgttaaggaaataaatgtttgtaaagtca

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K15978 AKAP8L, HA95; A-kinase anchor protein 8-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11200 lncRNA downstream 38463 29156844 ~ 29158718 (-) True G7574
TU11224 lncRNA downstream 44636 29132468 ~ 29152545 (-) False LOC122362981
TU11169 lncRNA downstream 65089 29119003 ~ 29132092 (-) False G7563
TU11167 lncRNA downstream 65234 29115018 ~ 29131947 (-) False G7563
TU11289 lncRNA upstream 86847 29290761 ~ 29291343 (-) True G7620
TU11294 lncRNA upstream 88712 29292626 ~ 29293410 (-) True G7624
TU11194 lncRNA upstream 97893 29301807 ~ 29302889 (-) False G7569
TU11303 lncRNA upstream 113667 29317581 ~ 29318226 (-) True G7629
TU11316 lncRNA upstream 143308 29347222 ~ 29347629 (-) True G7637
XM_043262579.1 mRNA downstream 1704 29184982 ~ 29195477 (-) False lpar2b
XM_043262421.1 mRNA downstream 1704 29184982 ~ 29195477 (-) True lpar2b
XM_043262493.1 mRNA downstream 1719 29184982 ~ 29195462 (-) False lpar2b
XM_043253734.1 mRNA downstream 14493 29170642 ~ 29182688 (-) False LOC122355388
XM_043253649.1 mRNA downstream 14493 29170642 ~ 29182688 (-) True LOC122355388
XM_043263483.1 mRNA upstream 229 29204143 ~ 29208413 (-) True mvb12a
XM_043220643.1 mRNA upstream 4552 29208466 ~ 29215399 (-) True olfm2b
XM_043253082.1 mRNA upstream 13067 29216981 ~ 29240840 (-) False col5a3b
XM_043253003.1 mRNA upstream 13067 29216981 ~ 29240840 (-) False col5a3b
XM_043252995.1 mRNA upstream 13067 29216981 ~ 29240840 (-) True col5a3b
TU11178 other downstream 68406 29049743 ~ 29128775 (-) False G7563
TU11193 other upstream 97893 29301807 ~ 29310598 (-) True G7569
TU11395 other upstream 222380 29426294 ~ 29434213 (-) False LOC122354733
TU11364 other upstream 242037 29445951 ~ 29461849 (-) False G7648
TU11407 other upstream 248845 29452759 ~ 29475388 (-) True G7655
TU11359 other upstream 253601 29457515 ~ 29473561 (-) True G7648

Expression Profile