RNA id: XM_043260020.1


Basic Information

Item Value
RNA id XM_043260020.1
length 2070
RNA type mRNA
GC content 0.55
exon number 9
gene id ears2
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 29589963 ~ 29594827 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCTCACACGTACAGCAGTGgtttttatgtggttttatttttctaagtATAAGTCAATTTCTGAGAAGTACATcaaaagtagataaaaagtATACTTTCCTATTTTCTGGTTGTCAATGCTATGTTTCCATCTAAAGAGTCGAATTAAACTTATGCGCAAaacaaatattgcataaaacactTGCAAATGAAGCACCTTTTCTATTCAACgagtcaaagagaacaaaagagTCTCGTCCTGATAAACCGTGGCACTAAATATCAATAAGAATATAGGATCAAACTAGCCTACTTCcacctcagagagagagagagagagcgagctgAAAGTTTATCCGACTCATTTATGCGTTTTTTCAGATTTCTGACTGAGCATGTATTTATGCAGCGCTGCGTGTGAAAGTAGagacttttgttttgctttgtggaGCAGGAAGTGCCGCGGAGGTTCTCCGGAAGTCTCGTGTTCAGCTATGGGCGCGTGAAGATGTTCTGTGTCTTGAGGAAAGTGTGCTGGAGGAGAGCCGGCGCGCGCAGAGGCGTGTGCACGAGACAGCCCGGGCCGCGCGTCCGCTTCGCGCCGAGTCCCACAGGGTTTCTGCATCTCGGGGGCCTCCGCACAGCGCTCTATAACTATCTGTTTGCCAAGCAGCGAGGGGGAGCCTTCATCCTGCGTCTGGAGGACACTGACCAGAGCCGCCTGGTACCTGGAGCCGCCGACGACATAGAGGACATGCTGGAGTgggcggGCATCCCGCCGGATGAGAGCTGCAAAAGAGGAGGGGATTATGGGCCGTATGTTCAGTCTGAGCGACTGCAGCTTTACTCGCAGGCAGCCTCCGCTCTGCTGCAGACGGGACACGCCTACTACTGCTTCTGCTCCAATCAGAGGCTGGATCTGCTGAAGAGAGAGGCGCAGCGCAGCGGACAGGTGCCGCGGTATGATAACCGCTGTCGAGAGCTGCCGTCGGAGCAGGCGCAGCAGAAGAAGGCCCAGGGCGCTCCGTGTGCCGTCCGCTTCAAGCTGGACTCCGGAGCAGAGGTGTTCCAGGACCTGGTCTTCGGCTGGACGCGGCACGATCCGGCAGCAGCGGAGGGAGATCCGGTGATCCTGAAGGCGGACGGCTTCCCCACCTATCACCTGGCCAGCGTGGTGGACGACCACTCTATGTGCATCAGTCACGTGCTGCGCGGCTCCGAGTGGCTGATCTCCACCGTCAAACACCTGCAGCTGTTCCGGGCGCTGCGCTGGACCCCACCGGCTTACGCTCACCTGCCGCTGCTGCTCAACCGTGACGGCACCAAGCTGTCCAAGAGACAGGGAGACATCTTCGTCCGGCGCTTCCTCGAGCAGGGCGTGCTGCCCGAGACCCTGCTGGACATAGTCACTCACGCAGGATCCGGCTTCAGCAgTAATCGGATCGGCCGGACTCTGGATGAATTAGTTTGTGAGTTTAACATTTCCACGATCACGACACACTCGGCCTTACTAGACCTGGACAAACTGGATGAGTTCAACAGggttCATCTGCAGCACAGGATCGAGGCTGAGGAGAAGTGCTCTGTGCTGCAGGATGAGCTGCGGCGGCAGGTTCTTCACACACACGGCTCTCAGATCAGTGACCAGACCGTCCTGGAGCCTCACTACATTCAGAGAGTTCTGCAGCTGCGCAAGgGTCACATCTGCTCGCTGCGGGAGCtcctcaatcacacacacacatacctgtgGATCCGACCGAGAGTCACACGGCAGCAGCTGCAGGAAGTGAGCTCAGAGGCAGGGGACATCGCAGCGGCGGTCATGCAGCTGGTGGCATTAAGTGGCTCGTTCCAGTCCACAGAGCATCTGAACGCTGAGCTCAAACTGATCGCCAGCAGACTGAAGCACACAAAATACAGCGGAGCCATGAGAGTGCTGAGACTCGCTCTGAGCGCACAACAGCAGGGTCCCAGCGTGGCTGAGATGATGCTTTCTCTGGGAGAACAGGAAGTGTGTGTTCGTCTTCAGAAAGCTCTGGAGCACTGATGGGAAACTTGATCTGTGTTTATTAAAGTGGGTGTAAATATTGA

Function

GO:

id name namespace
GO:0006424 glutamyl-tRNA aminoacylation biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0000049 tRNA binding molecular_function
GO:0004818 glutamate-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11448 lncRNA downstream 8836 29524195 ~ 29581127 (-) False G7675
TU11447 lncRNA downstream 8836 29577958 ~ 29581127 (-) True G7675
TU11467 lncRNA downstream 36377 29522899 ~ 29553586 (-) True G7686
TU11486 lncRNA downstream 40761 29547872 ~ 29549202 (-) True G7694
TU11459 lncRNA downstream 89266 29496887 ~ 29500697 (-) True G7683
TU11571 lncRNA upstream 291464 29886280 ~ 29886672 (-) True G7751
TU11576 lncRNA upstream 319852 29914668 ~ 29915054 (-) True G7755
TU11585 lncRNA upstream 423467 30018283 ~ 30018557 (-) True G7761
TU11590 lncRNA upstream 437754 30032570 ~ 30037959 (-) True G7764
XR_006251747.1 lncRNA upstream 503042 30097858 ~ 30099331 (-) True LOC122351377
XM_043245650.1 mRNA downstream 66720 29519894 ~ 29523243 (-) True wfikkn1
XM_043253878.1 mRNA downstream 71087 29502505 ~ 29518876 (-) True zmp:0000001082
XM_043245639.1 mRNA downstream 113882 29472300 ~ 29476081 (-) True LOC122349546
XM_043245627.1 mRNA downstream 117676 29470344 ~ 29472287 (-) True LOC122349539
XM_043252980.1 mRNA downstream 163229 29411107 ~ 29426734 (-) True LOC122354733
XM_043218492.1 mRNA upstream 191769 29786585 ~ 29792237 (-) True LOC122324192
XM_043258250.1 mRNA upstream 205162 29799978 ~ 29806220 (-) True LOC122358417
XM_043265106.1 mRNA upstream 211771 29806587 ~ 29808583 (-) True LOC122363120
XM_043218256.1 mRNA upstream 214558 29809374 ~ 29811519 (-) True LOC122324036
XM_043256992.1 mRNA upstream 227441 29822257 ~ 29832148 (-) False LOC122357555
TU11380 other downstream 113625 29475474 ~ 29476338 (-) False G7648
TU11406 other downstream 114575 29467125 ~ 29475388 (-) False G7655
TU11367 other downstream 116402 29457515 ~ 29473561 (-) False G7648
TU11666 other upstream 597385 30192201 ~ 30197848 (-) True G7816
unassigned_transcript_161 other upstream 763263 30358079 ~ 30358151 (-) True trnar-ucg_101
unassigned_transcript_162 other upstream 763579 30358395 ~ 30358466 (-) True trnaq-uug_9
unassigned_transcript_163 other upstream 765004 30359820 ~ 30359892 (-) True trnar-ucg_102
unassigned_transcript_164 other upstream 765790 30360606 ~ 30360678 (-) True trnaq-uug_10

Expression Profile