RNA id: XM_043260524.1


Basic Information

Item Value
RNA id XM_043260524.1
length 1601
RNA type mRNA
GC content 0.55
exon number 9
gene id LOC122360084
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 29267132 ~ 29272553 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAACTAAATCAGAAATATAGGAAACCAGGAAGATCTGGAAGGTGCTGAGCTGAAGTGAGgagctttctctttctcttctgttgTGGTCAGAGAagaaatgcatgtttacatGAATAAACCAGAAAGACGCTTTGAGACCGAAGAGAGACCAAGAGCTGATGACCAGCACTGAGACTGAGatGGACGTGAGGATCCCGGTGGAGTCTGAGTCTGAGGTGTGGTCTCTGTCTGAGTCTGAGTTCAGCTGTCACTGCTGCTATGAGGTTCTGGTGGAGCCCACCACACTCACCTGTGGACACAGCTTCTGCAGACACTGTCTGGCCAACTGGTGGGCCTCCGCTCGGCCCCGCGTCCGCACCGACTGCCCAGAATGCCGAGCGCTGTGGGTGGGCTTTCCCAAAGTCAACATCCTGCTCCGggacGCGGTGGAGAAGCTGTTCCCCGCTGACGTGAGCCGCCGGAAGCAGGCCGTCCTGAGCGATCCGTGGCTCTCTCATGTTCTCCAGGTGTTCCAGCAGCAGGAGAGGAGACAGGCCCCTCGCGCAGCTCCGCCACAGAACCCACCGCAGCTTCCTATAATGGACCAGCGGCTGTTTAATGTGTTGAATCAAGTACAGCTTGACATGTTGAATATGCCAGAGTTCAACATCCGAGGGATTTGCTCTGGAATCAGTATAGTGCTGTGCTGCATGGTcgtgttgGTGTTAGTATGGCGTGTGTACAGTGCCAGCTCCAGTCATGAGGTGCTGCTCACTAAACCTCTCAGCAGGTGGAGCGCTGATGATGTCACTCTGTGGGTGGAGCATCTGAGCGTCTGGACCAATCAGTATAAAGAAACCTTCCGCAGGGAGAAGATCAACggcaggttgCTGTTCTCTGTCAGTGACACTGATCTGTCGTCAGCTCCGTTCAACATCAGGAACGAGTCTCACAGACAGATCATCCTCCAGGAGATACACAGACTCAGACAGCGCCGGCTCTCACCCAGCCTCTGGGAGTacaagGACCTGTATTTAGGGAAGACTCTGTTTCTGCTGCTGAGTTTGCGCAGGTTTCCTCGTCTGACTCTGCTCGGTCTGTTCCTGTTTGATTATGAAGACACGTTCCTGCCCTTCATTCACAGCAGCTGCCCGGCTCTGAAATCACCGGACCTCCTGACCGACACGCCGCTGGATTGGCCGGGCTGGCGTCAGTGGGCGGAGTTTCTTCTGATGTACTTCCTGCTGCCCTATCAGCTGCTGTCAGCGTTCGCCTGGCGCTGGATGAGCTCTCATTACTGGACGGCTCGTGTGGTCATGCTGCACGCCGTCTTACTGACCGCTCTGGATGTGCACTTCTTCTGGACGCTGCTGAAGACGGGACAGATGAGGACGCTCCCTAAGCGTGTCTGGAAGGAGCTGGTGAGAGTGACCCTAGAGGAGACTGTGTTGGTGCTGCTCTGGTCCCTGGTCCCTCTGCTCTTCTGTAACTGTCTGTTCTACTACAACCTGTACATCTACCCCTTCAACACCGCAGcgctcctcaaacacacactgctgcacacacacacacagcacggggggatctgacacacacacactgagagacacacacacacactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11200 lncRNA downstream 108414 29156844 ~ 29158718 (-) True G7574
TU11224 lncRNA downstream 114587 29132468 ~ 29152545 (-) False LOC122362981
TU11169 lncRNA downstream 135040 29119003 ~ 29132092 (-) False G7563
TU11167 lncRNA downstream 135185 29115018 ~ 29131947 (-) False G7563
TU11289 lncRNA upstream 18208 29290761 ~ 29291343 (-) True G7620
TU11294 lncRNA upstream 20073 29292626 ~ 29293410 (-) True G7624
TU11194 lncRNA upstream 29254 29301807 ~ 29302889 (-) False G7569
TU11303 lncRNA upstream 45028 29317581 ~ 29318226 (-) True G7629
TU11316 lncRNA upstream 74669 29347222 ~ 29347629 (-) True G7637
XM_043258097.1 mRNA downstream 1778 29258792 ~ 29265354 (-) False txndc11
XM_043258147.1 mRNA downstream 1778 29258792 ~ 29265354 (-) False txndc11
XM_043258020.1 mRNA downstream 1778 29258792 ~ 29265354 (-) True txndc11
XM_043253082.1 mRNA downstream 26292 29216981 ~ 29240840 (-) False col5a3b
XM_043253003.1 mRNA downstream 26292 29216981 ~ 29240840 (-) False col5a3b
XM_043261344.1 mRNA upstream 698 29273251 ~ 29276704 (-) False LOC122360529
XM_043261265.1 mRNA upstream 698 29273251 ~ 29276701 (-) True LOC122360529
XM_043257616.1 mRNA upstream 11694 29284247 ~ 29289493 (-) False LOC122357818
XM_043257448.1 mRNA upstream 11694 29284247 ~ 29289492 (-) True LOC122357818
XM_043257534.1 mRNA upstream 11694 29284247 ~ 29289491 (-) False LOC122357818
TU11178 other downstream 138357 29049743 ~ 29128775 (-) False G7563
TU11193 other upstream 29254 29301807 ~ 29310598 (-) True G7569
TU11395 other upstream 153741 29426294 ~ 29434213 (-) False LOC122354733
TU11364 other upstream 173398 29445951 ~ 29461849 (-) False G7648
TU11407 other upstream 180206 29452759 ~ 29475388 (-) True G7655
TU11359 other upstream 184962 29457515 ~ 29473561 (-) True G7648

Expression Profile