RNA id: XM_043260931.1


Basic Information

Item Value
RNA id XM_043260931.1
length 2374
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC122360275
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 28314466 ~ 28320962 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGATGGAGCTCCAGCTGCTAATACTGTGTCTTTCATAGAAAGGAGGAgcgagggagagaaagagaaagagagagagagagagacagagagatagagctAGAGCTCATCATTAAAAGAAAGCACCAGCTCCTCACAGACCGAGCAGCATGATCCAGATCTGTGAAGATATACTCCTCAAACTtcacctgctgctgctgctcactTCAGTCTGTGAGACGAGTGAGATCTTGACTTTCACTGCTCATGAAAGAGGGACGGCTGAGATACGGTGCCCATATGAGTCTGGACATGAAGAACTTCAGAAGTATCTCTGCAGAGGAGAATGTCTAAGAGTGAATAAAGACAAAGCTGTTGAGTCTGAATCAGAAGCTAAAGGCAAAAGATTCTCTCTGATTGACAATAAAACAGACCGGATCTTCACCGTCAACATCACTGATCTGAGAACAGAGGATCAAGGCAAATACTGGTGTGGAGTAACAACGGGATTTGGAAAATCTGATTATTACAGAGAGATTCACCTGGAAATTAAACTTGTGTCTGGAGTGTTTGGTGTGATTGGAGGACGTCTCTCGATCACCTGCCGTTATGAAGGGGAACTGAAGAATGATGTCAAGTTCATCTGCAAAGAAAGCAACCCGTCCCTGTGTGAGGAATCAGCTATCAAAGTCTCATCAGAGACAAACAGCAGTAAACGGTTCTCTCTGAGCGACGATGAGTCTGCAGTCTTTACTGTGACCATCACTGGTCTGAGAGAAGAGGATTCTGGGATATACTGGTGTGGAGCTGTACGGAGAGGACAAGAGCGCAAGAGCAAGTGGATTTCAGTCATTAATCTGAGAGTTTCTGCAGCTACAACAGACAGACCTTCATCTAAACCAACAACAGCTTCATTTCGCACCAGCAAACCAGTGACAGCAGATACTGCCTGGAACAGAACCGTCACACCTTCACCCTCATCAACATCTTCACCCTCATCAACATCTTCACCCTCATCAACATCTTCAccctcatcatcatcttcactatcaccatcaccatcatctgcattgtttttctctgctaacacagacacacaaccAGgTTTCACGGCAATCAGCATGGTGGTGGTCATCGTGATACTGACAGGCCTTGGATCGTCACTGTTCCTTTACTTGAGACGGAGGCAGAAGAAAGAAGGAACTCGGCCCAAAGATGTGGTTCACAGCCCGGCTAAGAATCTGCCCGATGGAGAAACTAGAGAAGTCACACATACAGACTGTGATTACGAAGACATCAGCAGCACTCTTGATCATCCTGACTATAGTACGGTCCTTTTAGCCTTCACCGAACATGACGCCCCTGTTTACGCTTTAGCACAATTACCCAGCAGCCCCTCTGATGATCTCAACTACTCCAGCATCAGATTCCCAGCCTCACGTCTTTCAGACAGGACCTCTGATGAGCAGGAGACATGCCACTACTCAACAGTTAGACCATAACAGACAGAGACCAGGTTAAAGCCGAATCACACCGAACTGAGGATTGCTTCTCACTTAAACCTGTGGTCCATACATTTTAGATAAATCAGTATTTGAGACATCACTGATTGTCTCTTATTCATTCATAACCACAAGTCATTTAGTATTACAGTACATAATGAAGAATTAAATGAGTAGTGATGGGAATAACAGCGTTAAAAACGTGTAAAACGTGTAAATTAGTGTAAAATGGTATTCTGTTTAGTGtccttttcattaatttaacttatttatatttGGGACAGGCACTGTATGTGAATAGTTACTTTCACTGGTAATCAGTTACTCTTATAATGATGCAACTCGGTTACTTTTTGTGAGTAGTAACTAGCAACTAtaactttcactttttaaagcAATGTGCCCAACACTGTAAACGACTGGAGAAAATCaatgttcaaataataaaagttcaaataaaaaatctgaatgaaaagTTACAAAGAGTAACCGACGGGTTGAAACGTTCATGTGAGGTGATTCATGTTTttgagatataaataaataagcccATTTTTATTGACGAGTAGCCTTAATTTTTTAGATCCTTAAATTGCTCTGTGGTCTTAAcgttaacaaaaacatatatatttcatattccCTGCATAATGCATATGCACAGTTGAATGCACTTATCTTCTGTGGATGTGAACCTAAACAGTGGGACAATGGTATATCAGCGCagaaaagtgaaagtgaaagcgCAGCTCTGAGCAGGACGTCCTTTatcagaacagttttttttaagtgaaactaGGAAGCACCAGAGAGCTGCGGGACAGGTACCTAGTGTTTAGTTTGTCTTAACTTGTTTTTAACCATTATCGCGAATTCATGTTTGCtgatacaatttatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11036 lncRNA downstream 29132 28264397 ~ 28285334 (-) True G7480
TU10641 lncRNA downstream 74771 28238856 ~ 28239695 (-) True G7238
TU10636 lncRNA downstream 91236 28222256 ~ 28223230 (-) False nxnl1
TU10557 lncRNA downstream 199539 28109682 ~ 28114927 (-) True G7182
TU10548 lncRNA downstream 240160 28073917 ~ 28074306 (-) False LOC122349330
TU11095 lncRNA upstream 87280 28408242 ~ 28410308 (-) True G7516
TU11096 lncRNA upstream 93990 28414952 ~ 28417571 (-) True LOC122326209
XR_006247450.1 lncRNA upstream 94481 28415443 ~ 28417536 (-) False LOC122326209
TU11100 lncRNA upstream 110361 28431323 ~ 28431628 (-) True G7521
XR_006247505.1 lncRNA upstream 167619 28488581 ~ 28489509 (-) True LOC122326719
XM_043261700.1 mRNA downstream 35857 28273718 ~ 28278609 (-) True LOC122360767
XM_043261654.1 mRNA downstream 36831 28273718 ~ 28277635 (-) False LOC122360767
XM_043245377.1 mRNA downstream 40917 28271569 ~ 28273549 (-) True LOC122349362
XM_043249779.1 mRNA downstream 91219 28220899 ~ 28223247 (-) True nxnl1
XM_043246520.1 mRNA downstream 94119 28218282 ~ 28220347 (-) True LOC122350202
XM_043262004.1 mRNA upstream 218 28321180 ~ 28324016 (-) False LOC122360989
XM_043261924.1 mRNA upstream 218 28321180 ~ 28324016 (-) True LOC122360989
XM_043262114.1 mRNA upstream 407 28321369 ~ 28324016 (-) False LOC122360989
XM_043262075.1 mRNA upstream 407 28321369 ~ 28324016 (-) False LOC122360989
XM_043254998.1 mRNA upstream 56037 28376999 ~ 28382875 (-) True LOC122356343
TU11020 other downstream 65943 28244128 ~ 28248523 (-) True G7475
TU10496 other downstream 238022 28074648 ~ 28076444 (-) False LOC122349330
TU10417 other downstream 375014 27754782 ~ 27939452 (-) False G7105
TU10420 other downstream 375014 27754782 ~ 27939452 (-) False G7105
XR_006250838.1 other downstream 1059399 27241224 ~ 27255067 (-) False LOC122343833
TU11081 other upstream 70077 28391039 ~ 28392053 (-) True G7508
TU11094 other upstream 85220 28406182 ~ 28446591 (-) True G7515
TU11106 other upstream 202743 28523705 ~ 28525551 (-) True G7527
TU11178 other upstream 728781 29049743 ~ 29128775 (-) False G7563
TU11179 other upstream 728781 29049743 ~ 29128775 (-) True G7563

Expression Profile