RNA id: XM_043262075.1


Basic Information

Item Value
RNA id XM_043262075.1
length 1109
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC122360989
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 28321180 ~ 28324016 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCACAGAGACGACAGAAGAATCTCTGGCTGTCTGCTCCAGAAATGTACAGATTCACAAGAGCCAGCGTTTTATCAGCAGTGATGAAGAAGACCCTCCTCTTCGTCACGATCTGCCTGATTAAAGgTCACATGGGTGATGCCGCTGATGCCATGACCGGCATCACAGGAGGAAGTGTCATCATCAAGTGTGTGCACGAACCTGAAACTGCTAAAGAAAGTGCTAAAAGCTTTTGCAAAGTGTCAGGCATCGAATGTACAACTTTGACAGAGGAACAGCACGATTTGTGGATCCCAGAGGAGAGGTTCTCTCTGACTTATAACAGATCTCTGGGTTTGATTAGTGTGCTCATTAGAAACCTGAGAGAGAACGACAGCGGGGTGTACAGATGTGTGGCTGATGGCCAACCGTTTCACGAGGTGAAGTTAGATGTGGAACAAGAGTCGTGTTGTGGGACATCTGAGGAACAGACGGCTCATTTAAGAGAAACCGCTGTCATCCGCTGCAAATATCCAGAGAAATATAAATCTTATGTGAAGGAATTGTACAAAGTCCAGAATGGATCTCTCCTGCCTTACTTTTTCACACGAGAAAGCAATCCCAGATTTTCTCTGGATGATAGGAAACTGGAGAACGTCTTTACTGTGACTATCGCTAGCGTGAACGGACGTGATGATGGAGTGTATTTCTGTGGAGCAATCGATCCTGAAAACATCAGACACAGTCTGCTCTTCACAGAGATTCAGCTTCATGTTTCAGATCTCCGCGTCAtcattatagtgtgtgtgtgtctgattctGTTGTTAGCCGGAGGACTGAGCTTGTTTTGGCTCAAGCGGAGATGCAAAAAGACAAAAGCCACAGGCTCAGATCCGAGGAGCACAGAAGACGGTGAAGAGGACGTCTCATCTGCTTATTATGCAACAATCCCAGACTCTGGAAACACATCTGTTCAGAAGCCCATTGGATTAAACACACTTTATGTCACGACACGTTTACCCCTCTCACAGTGATTTCCACACACTGGCTGAACAATCCCAAATATGACATGTCTGTGATTCagtatgtttgtttattaatagaaataaagatTTGTGCCATTTATTTGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11036 lncRNA downstream 36035 28264397 ~ 28285334 (-) True G7480
TU10641 lncRNA downstream 81674 28238856 ~ 28239695 (-) True G7238
TU10636 lncRNA downstream 98139 28222256 ~ 28223230 (-) False nxnl1
TU10557 lncRNA downstream 206442 28109682 ~ 28114927 (-) True G7182
TU10548 lncRNA downstream 247063 28073917 ~ 28074306 (-) False LOC122349330
TU11095 lncRNA upstream 84226 28408242 ~ 28410308 (-) True G7516
TU11096 lncRNA upstream 90936 28414952 ~ 28417571 (-) True LOC122326209
XR_006247450.1 lncRNA upstream 91427 28415443 ~ 28417536 (-) False LOC122326209
TU11100 lncRNA upstream 107307 28431323 ~ 28431628 (-) True G7521
XR_006247505.1 lncRNA upstream 164565 28488581 ~ 28489509 (-) True LOC122326719
XM_043260931.1 mRNA downstream 407 28314466 ~ 28320962 (-) True LOC122360275
XM_043260851.1 mRNA downstream 3337 28314466 ~ 28318032 (-) False LOC122360275
XM_043261011.1 mRNA downstream 3337 28314466 ~ 28318032 (-) False LOC122360275
XM_043260770.1 mRNA downstream 3337 28314466 ~ 28318032 (-) False LOC122360275
XM_043261700.1 mRNA downstream 42760 28273718 ~ 28278609 (-) True LOC122360767
XM_043254998.1 mRNA upstream 52983 28376999 ~ 28382875 (-) True LOC122356343
XM_043245516.1 mRNA upstream 162752 28486768 ~ 28488502 (-) True LOC122349470
XM_043245530.1 mRNA upstream 169680 28493696 ~ 28496147 (-) True LOC122349476
XM_043245543.1 mRNA upstream 172254 28496270 ~ 28506538 (-) True LOC122349482
XM_043255903.1 mRNA upstream 261801 28585817 ~ 28611362 (-) False LOC122356751
TU11020 other downstream 72846 28244128 ~ 28248523 (-) True G7475
TU10496 other downstream 244925 28074648 ~ 28076444 (-) False LOC122349330
TU10417 other downstream 381917 27754782 ~ 27939452 (-) False G7105
TU10420 other downstream 381917 27754782 ~ 27939452 (-) False G7105
XR_006250838.1 other downstream 1066302 27241224 ~ 27255067 (-) False LOC122343833
TU11081 other upstream 67023 28391039 ~ 28392053 (-) True G7508
TU11094 other upstream 82166 28406182 ~ 28446591 (-) True G7515
TU11106 other upstream 199689 28523705 ~ 28525551 (-) True G7527
TU11178 other upstream 725727 29049743 ~ 29128775 (-) False G7563
TU11179 other upstream 725727 29049743 ~ 29128775 (-) True G7563