RNA id: XM_043263483.1


Basic Information

Item Value
RNA id XM_043263483.1
length 1501
RNA type mRNA
GC content 0.50
exon number 10
gene id mvb12a
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 29204143 ~ 29208413 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGTGACGTCGCCGCGGTGCATGACGGGAATCGTAGTCTACCGCTTCTTCCTGTTCTCTGACTGCGGCAGTGAGTTCAGGTCAGTTCGTGTttggaaacaagaaaaaactCCATAAACAGCCTATGTCTGTGTTCGAGTCGTCTAGTGCCTTCAGCAGGCCCATCTCTGCAGTGGCCTGGGCGTCAAACGCCAGCACCTGCCCCGCTCAGTTCATCCTGatcaCTCAGACCGAAGATGGAGCCTCTGCTAACTTCATCCGGGGGTTTGCAATCAAGTCAGGATACTATCTGTGTTACAGTAAGGATCTGTCCCGTGGGATGGTGGTGGCAGATGTGCAGGTGATTACGGATAAAGAGACGATTCCTCACGGTTACTGCTACATCCCAGAATTCCTGGACTCCAaGGGGTCTGTCGGGAAGAAGAAGCGCATCTGTGTGCGGATCGTTCCTGTGGGCAGCGTTACGACGGCTGTTCTAGATCTCAAACTGACCGCCAGGAATAAGACCATGGTGCAGCAGTACACCTGCCTGGGgGACATGAATGGCTTCGTGGTGTGGTGTCTAAAGGGCCCGTTCTCCGCTCCGGCTCCTCAGGCCAAGCCTCGCAGTGTCAGTCTGGACATGCGCAGCCTCTCTCTGGAAGGAAGCGGACCCCCGCAGCCTCTCAAACCCAGcaaccacccTGAAGCCCCACCGAAAATCAGCCGTCGGCGCAGCAAGCTGGACACCAGCAGCTCGACGGAGGCCGTGTGTGACAGCGGGAACCACAGCAGCATCTACGGCATCACAGCCATGGATGGAGTTCCTTTCTCTCTACACCCGAAGTTTGAGTCTCAGTCTAActcaaaggtgtcTGTGAGCACGCTGAGCGACATCCGTATCAAATCAGTGCAGGACATCGAGAACGAGTATAACTACACGTTTGCGGTGGAGGAGCTGGCAGCGAGGAGAATCTGTCCTTCAGTGAGCGGCTGAAAGCGTTCCTCCCTCGAGTCCTGCCTCTGATCACCAAGCCACACAATCCTCCTGTTCTTCTGAAGTTCGAGCCGAACTCACACTACAGCTTTCGCGGGGCTGGTTCTGGGCGGtctccttctctcttttcttctctgggTTGGTTGAACGTGAAGGATTTCTTCATGCAAACACATTATGTGCGTGTTTCTGCATGTTACAGCTTTGCGTTTTTCACAACAGATGAACCAAAGTGCCTTCTCCGCAGAGATGTGTGCGTCCTTTTATAAGaccaaatattttatgtatctGTTTTGGGATTTTTAGCTGCAgtttagtatttaaaaagtgTGGTTACactaatattttgtatttatcgTATGAAAACTAAGTTTCGTGGGGaccaaaaaacatctttaaacattcttaaaactgTTGTATAATGTCATACTGCGGTGCTCTGTGAGTTACTCTTTGTAAACATTTGTACTTGCTTTCTTCAAATCTGcctttttgtgaaattttaataaaaatgatcgaATCCTGA

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0031902 late endosome membrane cellular_component
GO:0017124 SH3 domain binding molecular_function

KEGG:

id description
K12186 FAM125; ESCRT-I complex subunit MVB12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11200 lncRNA downstream 45425 29156844 ~ 29158718 (-) True G7574
TU11224 lncRNA downstream 51598 29132468 ~ 29152545 (-) False LOC122362981
TU11169 lncRNA downstream 72051 29119003 ~ 29132092 (-) False G7563
TU11167 lncRNA downstream 72196 29115018 ~ 29131947 (-) False G7563
TU11289 lncRNA upstream 82348 29290761 ~ 29291343 (-) True G7620
TU11294 lncRNA upstream 84213 29292626 ~ 29293410 (-) True G7624
TU11194 lncRNA upstream 93394 29301807 ~ 29302889 (-) False G7569
TU11303 lncRNA upstream 109168 29317581 ~ 29318226 (-) True G7629
TU11316 lncRNA upstream 138809 29347222 ~ 29347629 (-) True G7637
XM_043258766.1 mRNA downstream 229 29197181 ~ 29203914 (-) False akap8l
XM_043258688.1 mRNA downstream 229 29197181 ~ 29203914 (-) True akap8l
XM_043262579.1 mRNA downstream 8666 29184982 ~ 29195477 (-) False lpar2b
XM_043262421.1 mRNA downstream 8666 29184982 ~ 29195477 (-) True lpar2b
XM_043262493.1 mRNA downstream 8681 29184982 ~ 29195462 (-) False lpar2b
XM_043220643.1 mRNA upstream 53 29208466 ~ 29215399 (-) True olfm2b
XM_043253082.1 mRNA upstream 8568 29216981 ~ 29240840 (-) False col5a3b
XM_043253003.1 mRNA upstream 8568 29216981 ~ 29240840 (-) False col5a3b
XM_043252995.1 mRNA upstream 8568 29216981 ~ 29240840 (-) True col5a3b
XM_043258097.1 mRNA upstream 50379 29258792 ~ 29265354 (-) False txndc11
TU11178 other downstream 75368 29049743 ~ 29128775 (-) False G7563
TU11193 other upstream 93394 29301807 ~ 29310598 (-) True G7569
TU11395 other upstream 217881 29426294 ~ 29434213 (-) False LOC122354733
TU11364 other upstream 237538 29445951 ~ 29461849 (-) False G7648
TU11407 other upstream 244346 29452759 ~ 29475388 (-) True G7655
TU11359 other upstream 249102 29457515 ~ 29473561 (-) True G7648

Expression Profile