RNA id: XR_006248576.1


Basic Information

Item Value
RNA id XR_006248576.1
length 2202
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id LOC122333031
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 18993761 ~ 19176827 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATCCTTGTAGGACCTCAGCGAGCGGTCagtgtacacacatacacagacttTGCGTCTTCTGCCCGCGGAGGCTGCTCTTCAGCACCCGGCGCGAGAACAATTCCCCAACTTCACTTCACGTGCGCTCGAGACGCCGCGCGCGCACACTCACATTCTGTCACATTCGACGGTAAGCGCTCACGCAAGAAAACCTCTGTCTGACTGACTGTCTccgagaagaagaagaagaagtagaaacagagagagaaagagaaaaagaaagagaacgaGAGAATCTCTCCTCACCGAGCTGCTTATTTTCTCTGTCAAGCGTGTATCATCCGCTGTGTGGTGAAAAGCGCAGACCTGCGTGGGACCGATTTCCCGCCGCTGCAAGGAAACACCAACCGTCCTCTGAAAGGCCTCTGCATCTTCGTCCTGAAGCATGACTATTCGTGCATaaatgcatctctttctgtcAACACAGCAGTCTGACCATTAAACGCAGTCTGGGAGGAAATGCGAGAAAAGAGGTTGATTTGCTGATTCCCAGCCTTGATGCTCTGATGTCTGCTGGCCCTTGACCTTCATCCATGGATTAGTTCCTTTACGCTTGAGGCAGATCTGACTGACCAGATGGTATCCCTATGTGTCACTTCTTGAGGGTCAGGTGAGTGATGCCctgtttgaaatgacatttagTTACTCCATTTGGTCAGGGCTGTTAAAAAGATTAACCTTGAGaacaagaaataataaatgGGATGTAATGCTATGCATTACTATGAATCAGAGACAGCTAGGCACAAAAAATAAGTTGCGAAATCCATACGGATCAAACATCTCTATGCGAACCAGTCGCTTGGCCCGTCaacaatcaaaatgttttaatacgGCTTGATTTTCTTTGTAGCGTAAAGCCTGAGCATTTTCGTGAATGCATATTGTGTCCGTGTTAGTGTGTCAGTGTGTACAAGACATATTTTCTCCCATCCCTCCGAGGCTTAACGGCGTTGTCCAATCAGCGACAGGCGCTGCCTAGATGAGCCAATGAGGACACAATTGGATAGTATTCGTTCTTTGGAATCAAAGGCGCAGCACTCCTATGATATTAAAATGCACTCTGTCTTTGTTCGTACCACGCCAAACCAAGAGTGAAAGGGGGAGGGTAAGGGGAGAAAAAACACACTCcaccaaaaaaacctttttgtatTCCTCCCCATATGTCTCTGCGGGTGGGCACGCAATGACTCTCCCACTTCTTGCTTTGAAATCTCTGCCACTTCAGCTGCCTCCTTGAGCTTTTGTCAGCTTGAGACGCCGCACCTCGATGAAGTAGGGCAACTAGAGTGCAGTCTACAATCCTTACCGCCGCCATCTTGGCCCTTGTCATTTCCTTTACTTGTTTTGTCCCAGTTTTCAGTGTTATAAAGCTATACATCCAGGTTTTTAACCCGCCCCAGTTGTTCATCTTAACACGTTTAATATCTTTCTTTTCGTTGCTTTGTTTCGACTTCACGTTTTCCATAGCAGTTGACCTTTCTCTTCGTAGTAATGGTACATATTGTTAGACTCTTCCTTCAAATTCAAAAAGAAAGGGGTTTTGATTTATGTTTTCTCTTGATTGAATGGGCCAGTTTTCCGTTCTTTTTTCTGTATGGAGTGGAGATATTATTGGGCAAATTGCACGGCTTTCATGCAGATAAATGGGCGTTCGATAAAAGCCGCAGTGTTTTTTGAAGCAGCCAGAGAGCCGGGCTGCATTGGGTGATAACTTCATCGCAGCGTGGGGTCAGGGGCAGGAAGAGAAACCCGGCTGAAAGGGGATTAAGAGGAGCCATCGAAGAGCTCTGGACTCGGACCACCTGCCGGGGAGCCCAGGCCTGGTCCGTGCCTAATGTTTCTGATCAGCTATGCCATTGTCTGTGTTcccctctttcttttctccctTCACAAGAAAGAATAGGACTGCCTCCACATTTCCCTGAGCTCAGATTAGCTGTTGGCCCCCTTTTTTTTGGCGTTGTCATATACTTGCCACTATTTTGTAACCGAAGTTCAGGGATCTGTTGATGGTGCCCTCCGTTTAGATATGGGATGATGAAAATATGCAAAGGGGATCATTTACCCACAGTTTCTGTCATTGGTTTCTAACCGCTACGTTGCTACAAAACCATATGCCATTTTTATGTCCTGGTCAAATATCCCGGTGATGCTCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6222 lncRNA upstream 246008 18747234 ~ 18747753 (+) True G4361
TU6221 lncRNA upstream 270466 18723075 ~ 18723295 (+) True G4360
TU6219 lncRNA upstream 276666 18716874 ~ 18717095 (+) False LOC122340556
TU6217 lncRNA upstream 278530 18714947 ~ 18715231 (+) True G4356
TU6197 lncRNA upstream 285332 18706209 ~ 18708429 (+) True G4345
TU6439 lncRNA downstream 347719 19524546 ~ 19524780 (+) True G4531
TU6463 lncRNA downstream 397584 19574411 ~ 19574760 (+) True G4553
TU6501 lncRNA downstream 538726 19715553 ~ 19777043 (+) False scoca
TU6504 lncRNA downstream 566335 19743162 ~ 19778083 (+) True G4579
TU6498 lncRNA downstream 597734 19774561 ~ 19777043 (+) False scoca
XM_043234072.1 mRNA upstream 120913 18868682 ~ 18872848 (+) True spcs3
XM_043233820.1 mRNA upstream 134816 18839950 ~ 18858945 (+) False wdr17
XM_043233828.1 mRNA upstream 134816 18839990 ~ 18858945 (+) True wdr17
XM_043233802.1 mRNA upstream 134816 18844190 ~ 18858945 (+) False wdr17
XM_043233805.1 mRNA upstream 134816 18844191 ~ 18858945 (+) False wdr17
XM_043229546.1 mRNA downstream 14266 19191093 ~ 19434722 (+) True tenm3
XM_043229727.1 mRNA downstream 14266 19191093 ~ 19434722 (+) False tenm3
XM_043229793.1 mRNA downstream 14266 19191093 ~ 19434722 (+) False tenm3
XM_043229933.1 mRNA downstream 14266 19191093 ~ 19434722 (+) False tenm3
XM_043230009.1 mRNA downstream 14266 19191093 ~ 19434722 (+) False tenm3
unassigned_transcript_101 other upstream 414930 18578750 ~ 18578831 (+) True trnas-aga
XR_006251260.1 other upstream 711000 18247250 ~ 18282761 (+) False dclk2a
XR_006251261.1 other upstream 711000 18247252 ~ 18282761 (+) False dclk2a
XR_006251846.1 other upstream 1384920 17573121 ~ 17608841 (+) False gab1
TU5228 other upstream 3340380 15653093 ~ 15653381 (+) True G3647
TU6436 other downstream 344257 19521084 ~ 19522399 (+) True G4528
unassigned_transcript_103 other downstream 935615 20112442 ~ 20112514 (+) True trnak-cuu
TU7127 other downstream 2144638 21321465 ~ 21361275 (+) False LOC122348864
TU7152 other downstream 2414050 21590877 ~ 21620580 (+) False rnf24
TU7172 other downstream 2455388 21632215 ~ 21635052 (+) True G5037

Expression Profile