RNA id: XR_006251593.1


Basic Information

Item Value
RNA id XR_006251593.1
length 1077
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id LOC122350307
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 23181003 ~ 23182431 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGCGCCACATAGGTGCAAGGTTTAATAATAACCAGTCATTGTATAATATAAACGTAACGATGCattagttattaataaataactaacaTTTATGTCACACCTCAGTTTTCAAAGGGAAAAGAGACTGTCTAATCAGCGAATGGAGGATGTGGTGCATGCATACTTCTGGGATTTAAATGACTGTGGTGGCAATACAGCAATATCTCAAGAGGAAGTATGGCTTTCAGTTTGAAGAAAAGAGGAAGTGctaaagcaaacacaaaacaatggaaaaaacaCGGAAACGTGACCTCTCAATGTCATCTCGGGCCGTTCTGCTTACTGTGACCAGGATCTCCTAACCCAGATTTCTGCTTCAATAAACGTTTCTTCAGCCAGCAGTATCTCCGAGACAGTTCAAAGGGTGGTTAATTGCACTGCACTTGAGAACTGACATGgtagaaatttcattttttgttaacTAAAGTTATATAAGAGCTGGAAAGTTCATAAACAAAGAGCTGGAGAGTTTCACCGTTAcaagttaatatataaatgcgaTTAAAAAAGGGCAGGGAGGACAAAAACTCAATTAAACTCATTCTCACTATTGCCTCTCTGATTATGTGGAAAACATTATCCACTAAAATCACGTTAgcaataatatttacttttttgccTTCCCCTTTTTAACAATTGGAATTTTGAAGGGAACCATAACAAACCACAGGCCTTCGCTCCAGAACACCACCACTTTGATCAAAATGAAATCATCGCTTGCTCCGCAACGATGGGCTGATTGGtgctctctcactcacacatgGTGCACACATTTTTGGGAGCCCGTGCCTGAAACTCACAAGCGCTTGTGCTACTTTTGTGTTCAGGAATAGGGGATTGTCATACGACTTTCATTAGCGCCGCTATGAATGATGAATTGATATCCTTTTACAATACACgacaaaatgaaattaaaaggtTTGCAAAAACCTCCTCTGAGAAATATGACGGTGCATGTTTGCCATTTagtgttttttgggggttgtttttattaagatttaataaaagatcacacagttgttgttgtttttttcat

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251594.1 lncRNA upstream 26702 23153734 ~ 23154301 (+) True LOC122350314
TU7957 lncRNA upstream 27405 23149192 ~ 23153598 (+) True G5522
XR_006251722.1 lncRNA upstream 136869 23042249 ~ 23044134 (+) True LOC122351271
TU7988 lncRNA downstream 288839 23471270 ~ 23471530 (+) True G5548
TU7996 lncRNA downstream 306685 23489116 ~ 23491559 (+) True G5553
TU7994 lncRNA downstream 307564 23489995 ~ 23732723 (+) True G5552
TU7992 lncRNA downstream 309183 23491614 ~ 23735603 (+) True G5551
TU7997 lncRNA downstream 310183 23492614 ~ 23493639 (+) True G5554
XM_043239805.1 mRNA upstream 33703 23064152 ~ 23147300 (+) False sh3pxd2aa
XM_043232697.1 mRNA downstream 22958 23205389 ~ 23276768 (+) True cfap58
XM_043241366.1 mRNA downstream 502364 23684795 ~ 23732246 (+) True sorcs3
XM_043251223.1 mRNA downstream 1001650 24184081 ~ 24192107 (+) False caly
XM_043251224.1 mRNA downstream 1001936 24184367 ~ 24192107 (+) True caly
XM_043246758.1 mRNA downstream 1033380 24215811 ~ 24218006 (+) True msx1b
unassigned_transcript_108 other upstream 121900 23059032 ~ 23059103 (+) True trnae-cuc_5
unassigned_transcript_107 other upstream 1296495 21884436 ~ 21884508 (+) True trnak-uuu
TU7172 other upstream 1545951 21632215 ~ 21635052 (+) True G5037
TU7152 other upstream 1560423 21590877 ~ 21620580 (+) False rnf24
TU7127 other upstream 1819728 21321465 ~ 21361275 (+) False LOC122348864
TU8005 other downstream 364011 23546442 ~ 23554625 (+) False G5559
TU8004 other downstream 364065 23546496 ~ 23554625 (+) False G5559
TU8228 other downstream 1102340 24284771 ~ 24293329 (+) False G5649
unassigned_transcript_109 other downstream 1485104 24667535 ~ 24667607 (+) True trnar-ccg_14
TU8452 other downstream 1521417 24703848 ~ 24704319 (+) True G5817

Expression Profile