RNA id: XR_006251726.1


Basic Information

Item Value
RNA id XR_006251726.1
length 791
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id LOC122351284
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 8446548 ~ 8448624 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTCACAGCCTTTTGCTCTGGTTGTGCATGCGGGAGGGATACAGAAGAGGGAGGAAGACAGgtcgagagagagaaagagggcaaAAACGGATACATGTCTGTGGCCATTTCTCTTCGATATAAGAgaATTCAAACAAACTCAGTGATAAATGGACTACATATGGCAGCCATCAATCCTGTCGCTGACTACAACTCCCAGAGAGCAACGCATCACTGGTGCGAAGCAGGAGATTACATGCTCTGTAGATCCAGGCACTTAATTACAGTATTGCACTGCAGCTGACAGACAGGCTTGGACACAATGGGATAATACCTACAAGAGCCTGCTAATAATTTACCTACCAAATTGACTACAGTTACCTGTTGGGTTCTTTCCCACAAGCTGTAACTCTGTGCACACCTCGTATTAATTCCTACCATCAAGAGCTCCACTGTGACTtcctgaaaacaaattaagactCAGAGCATATTCAGAATGGCATGCCAGTTACTATTATTGACAGAAAGTAGTACGCACTGCAGAATGTATGCTGTGCACAGTATATGCAAATGTTCTATGCACAGAAtaccaaatacattttacatttaccaaAATGCACATATCCAAAGCACAGCGCTGAATGATGTATAGTAAATTGCAGTAGTTTCAGCTTTGTATTTCCAGTGCGATTAATAAACAGGAAATAAccgtatttattattttttaactgaaaggcactcactgaattaaacatgaaatgtgGTGAAATTGTGTGAtaattttttaggtttttgttaTACATTGTCATTTG

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0031497 chromatin assembly biological_process
GO:0048468 cell development biological_process
GO:0006323 DNA packaging biological_process
GO:0006325 chromatin organization biological_process
GO:0022607 cellular component assembly biological_process
GO:0006333 chromatin assembly or disassembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0006334 nucleosome assembly biological_process
GO:0071824 protein-DNA complex subunit organization biological_process
GO:0065004 protein-DNA complex assembly biological_process
GO:0034728 nucleosome organization biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0071103 DNA conformation change biological_process
GO:0006996 organelle organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0070925 organelle assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0016043 cellular component organization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2701 lncRNA downstream 279161 8138483 ~ 8167387 (-) True G1868
XR_006250489.1 lncRNA downstream 369161 8076701 ~ 8077387 (-) True LOC122341751
TU2691 lncRNA downstream 369218 8075175 ~ 8077330 (-) False LOC122341751
TU2672 lncRNA downstream 462245 7953213 ~ 7984303 (-) False G1845
TU2673 lncRNA downstream 462245 7980771 ~ 7984303 (-) True G1845
TU2794 lncRNA upstream 43779 8492403 ~ 8493280 (-) False mgarpb
TU2796 lncRNA upstream 48978 8497602 ~ 8500177 (-) False mgarpb
TU2801 lncRNA upstream 107416 8556040 ~ 8607795 (-) False G1926
TU2919 lncRNA upstream 182840 8631464 ~ 8634397 (-) True G2010
TU2929 lncRNA upstream 220789 8669413 ~ 8670804 (-) True G2016
XM_043247042.1 mRNA downstream 266972 8172337 ~ 8179576 (-) False pcdh18a
XM_043247033.1 mRNA downstream 266973 8172337 ~ 8179575 (-) True pcdh18a
XM_043248886.1 mRNA downstream 628149 7805692 ~ 7818399 (-) False sclt1
XM_043248874.1 mRNA downstream 628149 7805692 ~ 7818399 (-) False sclt1
XM_043248882.1 mRNA downstream 628324 7805692 ~ 7818224 (-) True sclt1
XM_043239735.1 mRNA upstream 24195 8472819 ~ 8490055 (-) False elf2b
XM_043239707.1 mRNA upstream 24195 8472819 ~ 8490055 (-) False elf2b
XM_043239726.1 mRNA upstream 24195 8472819 ~ 8488299 (-) False elf2b
XM_043239716.1 mRNA upstream 24195 8472819 ~ 8485566 (-) False elf2b
XM_043239752.1 mRNA upstream 24195 8472819 ~ 8479224 (-) False elf2b
XR_006250550.1 other downstream 1150869 7218986 ~ 7295679 (-) False dmd
XR_006250549.1 other downstream 1150915 7205584 ~ 7295633 (-) False dmd
TU2401 other downstream 1277127 7162323 ~ 7169421 (-) False G1642
XR_006250919.1 other downstream 1319141 7071589 ~ 7127407 (-) False trpc5a
TU2105 other downstream 1905165 6539528 ~ 6541383 (-) False LOC122342514
TU2800 other upstream 154676 8603300 ~ 8607795 (-) True G1926
TU2970 other upstream 330594 8779218 ~ 8782587 (-) False LOC122351550
TU2978 other upstream 346447 8795071 ~ 8798355 (-) False LOC122351550
TU3335 other upstream 1950563 10399187 ~ 10401686 (-) True G2302
TU3397 other upstream 2293298 10741922 ~ 10745896 (-) False LOC122347930

Expression Profile