RNA id: XR_006251737.1


Basic Information

Item Value
RNA id XR_006251737.1
length 1064
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id LOC122351313
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 14734378 ~ 14736414 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAAAATTCTGCAGACTAAACCTGGTGGGGATGGAATCATCAGAGAGTACAACAAAACCAAATGCTTATCTGACAGCAACAGGAGAAAGATGGTCAATATTCTTACTGCAGATATGACTGAAAAGCACAGCTCATCTCCACCCAAACAAGAGAACTGTATGCTCAAGGAATCATTGCCCTGTTTCCATATCTTAGGGATCCATATGCAAAGCTTGGTTAtgaaCATTATTATGACCCTCAAAGTGGACAAGGGTACTTGTCAtggaaaataaagaacattCAGAGGAACAGTGCACCATCAGAGATCCGTAGATGTGTCCCCCAGTCTTTTGGTGGCCCATCTGCGCAGAGAGAAGCTTCATTCAGCACAGAAGTTATCCTGACCGAAGAACAGTATAGGGAAGCTGTTTCTCTTATGAAGCATACTTCAGAGGAGGTGACAGTAAAGGTCAAGATGAGGGAGACATTTCAGTATCGTCGCAAGATGGTTCATGACCCAAGCAGATGCACTGATGTGCTAACTGAATTTCCACGTTATTTGGATATTAAAGGCCTGGTAAGAACATTTGAGTTATTAATgtgatttagattatttttctgtgaattaAGGACAATAGAGAATATCTGTGGTGatttaaagttatattgattATGCATTGTAAAGATAATAAATTTGCCCttagttgcttttttttctgctttgttggGTTTTACAGATTGAGCTGGACATTGATTTgccagtgttttttaaaatcaaagatattgttgttaaaaatgaatttgtggTACTGGTTGCATCACCACTCAAAACTGTTTGCTTTGATGATCATCGTTATGCCTACAGAATTGAACCAAGACACTGTGAATCCTTGAAAGTGTTCAATGTCACTGAACTAATTTATTACAAACCTTTTGATATGCAAATGTCTTATGGGTCTGATaatttcttttggtttgttgTACCTTACTGCAGTCTTGTTACTACTTAGCTGTCAATGCAGgtcttatttcaaaatgtttttattttatcattttgacaaGTCGGAActgtatacatgttttaa

Function

GO:

id name namespace
GO:0004175 endopeptidase activity molecular_function
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5001 lncRNA downstream 20310 14686616 ~ 14714546 (-) False myoz2b
TU4985 lncRNA downstream 46996 14661474 ~ 14687860 (-) False usp53b
TU4987 lncRNA downstream 46996 14661474 ~ 14687860 (-) False usp53b
TU4986 lncRNA downstream 71439 14661474 ~ 14663417 (-) False usp53b
TU5004 lncRNA downstream 98269 14635694 ~ 14636587 (-) True G3475
XR_006251961.1 lncRNA upstream 5694 14742108 ~ 14742636 (-) True LOC122353106
TU5038 lncRNA upstream 12973 14749387 ~ 14750174 (-) True G3493
TU5041 lncRNA upstream 21706 14758120 ~ 14759025 (-) True G3495
XR_006249191.1 lncRNA upstream 35053 14771467 ~ 14772730 (-) True LOC122336242
XR_006249238.1 lncRNA upstream 36326 14772740 ~ 14773920 (-) True LOC122336348
XM_043237166.1 mRNA downstream 28213 14704493 ~ 14706643 (-) True LOC122342943
XM_043250189.1 mRNA downstream 42492 14686596 ~ 14692364 (-) True myoz2b
XM_043248738.1 mRNA downstream 49996 14663278 ~ 14684860 (-) True usp53b
XM_043237192.1 mRNA upstream 6231 14742645 ~ 14743676 (-) True LOC122342957
XM_043242889.1 mRNA upstream 42787 14779201 ~ 14784805 (-) True LOC122347500
XM_043254604.1 mRNA upstream 49985 14786399 ~ 14793366 (-) False synpo2b
XM_043255425.1 mRNA upstream 49985 14786399 ~ 14793366 (-) True synpo2b
XM_043256207.1 mRNA upstream 49985 14786399 ~ 14792332 (-) False synpo2b
TU4627 other downstream 850620 13882278 ~ 13884236 (-) False LOC122350629
TU4632 other downstream 892213 13841542 ~ 13842643 (-) False LOC122350606
unassigned_transcript_100 other downstream 1345531 13389253 ~ 13389325 (-) True trnar-ucg_69
unassigned_transcript_99 other downstream 1346350 13388434 ~ 13388506 (-) True trnar-ucg_68
TU4412 other downstream 1443133 13291296 ~ 13291723 (-) True G3072
TU5035 other upstream 10415 14746829 ~ 14748975 (-) True G3491
TU5081 other upstream 188671 14925085 ~ 14925363 (-) True G3522
TU5072 other upstream 284228 15020642 ~ 15029620 (-) True G3515
TU5142 other upstream 494125 15230539 ~ 15230886 (-) True G3571
XR_006251556.1 other upstream 1332763 16069177 ~ 16073920 (-) False alg11

Expression Profile