RNA id: XR_006251753.1


Basic Information

Item Value
RNA id XR_006251753.1
length 699
lncRNA type inter_gene
GC content 0.49
exon number 4
gene id LOC122351408
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 14249605 ~ 14267785 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

taaatacatatacattttttctaaattaaactTATTgctataaacatttcaaatttgagGTCAGGGTCGTAGCAACGTCTACCGCACATTTAGAAACAGGCGAGTCTGTCCCTTTGAACTGTGACCCATCGCCGATACTTCCGCCCGTCTTTCCTGATTTGTTAATCAGAGTTGAGTGAACTGAAGTTCAGCCAATCGTAAGACGAATCATCTCCTGGGCGTGTCTCCTGTTGCTTTCGCCATTTCTTGCGTTCGTTCGCTTCTTTGCTGTGTGGTGGTCCGGGGGGAAATGCTCGATTACGTtcttatttcaaacaaactCTGAAGAGTGACGGTTCTACTGAGAAGAACAGTCGTGGAGTTTATCAGACTGACGGGAAGCTGAAGACATGCTATTGTTGGAAGAAGgcCTGGCTTCCTGTGCTGTTGTTTGGCTAGGCAGGGGCTCCTGTATTCTGGGCTGTGCTGTGTACAACAGGGCTCTTGTTCCATGTCCCCTCGTGACCGCACGGCCTCATTTGTCTCCGTCAACACATTAACACATCAGAAAAGCCCCCTGCTGCTCTAAAATGCTGGAGAAAGCGTTCCTTCCATTACTGGTCAAGACACTACCCGCTACCCGCACTCACCCCAAAGTCCCGCCCACTGACGCTCGTCTGGACCCGGACTGCCAACTCGTCGGATGTCTCAGAAGTAGAC

Function

GO:

id name namespace
GO:0004614 phosphoglucomutase activity molecular_function

KEGG:

id description
ko00500 Starch and sucrose metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4640 lncRNA downstream 280825 13961708 ~ 13968780 (-) True G3232
TU4638 lncRNA downstream 322544 13924275 ~ 13927061 (-) True G3230
TU4625 lncRNA downstream 371290 13825494 ~ 13878315 (-) True G3222
XR_006251040.1 lncRNA downstream 460687 13787431 ~ 13788918 (-) True LOC122345850
TU4612 lncRNA downstream 462956 13783854 ~ 13786649 (-) True G3211
TU4679 lncRNA upstream 144982 14412767 ~ 14412975 (-) True G3266
TU4745 lncRNA upstream 222939 14490724 ~ 14491638 (-) True G3318
TU4808 lncRNA upstream 342712 14610497 ~ 14610786 (-) True G3357
TU5004 lncRNA upstream 367909 14635694 ~ 14636587 (-) True G3475
TU4985 lncRNA upstream 393689 14661474 ~ 14687860 (-) False usp53b
XM_043247260.1 mRNA downstream 135449 14113333 ~ 14114156 (-) True LOC122350613
XM_043247300.1 mRNA downstream 354321 13881893 ~ 13895284 (-) True LOC122350629
XM_043247248.1 mRNA downstream 406941 13829463 ~ 13842664 (-) True LOC122350606
XM_043240277.1 mRNA downstream 446550 13790575 ~ 13803055 (-) False sh3d19
XM_043247085.1 mRNA upstream 2468 14270253 ~ 14401149 (-) False fbxw7
XM_043247093.1 mRNA upstream 2468 14270253 ~ 14401149 (-) True fbxw7
XM_043247102.1 mRNA upstream 2468 14270253 ~ 14392470 (-) False fbxw7
XM_043247076.1 mRNA upstream 2468 14270253 ~ 14363032 (-) False fbxw7
XM_043247112.1 mRNA upstream 2468 14270253 ~ 14336607 (-) False fbxw7
TU4627 other downstream 365369 13882278 ~ 13884236 (-) False LOC122350629
TU4632 other downstream 406962 13841542 ~ 13842643 (-) False LOC122350606
unassigned_transcript_100 other downstream 860280 13389253 ~ 13389325 (-) True trnar-ucg_69
unassigned_transcript_99 other downstream 861099 13388434 ~ 13388506 (-) True trnar-ucg_68
TU4412 other downstream 957882 13291296 ~ 13291723 (-) True G3072
TU5035 other upstream 479044 14746829 ~ 14748975 (-) True G3491
TU5081 other upstream 657300 14925085 ~ 14925363 (-) True G3522
TU5072 other upstream 752857 15020642 ~ 15029620 (-) True G3515
TU5142 other upstream 962754 15230539 ~ 15230886 (-) True G3571
XR_006251556.1 other upstream 1801392 16069177 ~ 16073920 (-) False alg11

Expression Profile