RNA id: XR_006251869.1


Basic Information

Item Value
RNA id XR_006251869.1
length 382
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id LOC122352408
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 9030823 ~ 9031823 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATGAGGAATATACTACTGTGGCAAAggaggaaagaaaataaatacaaataaagaggGCTTCGTAAATTCCAAATATGCATATGAATATGGAAACAGGACAACTTGTTTATCTGTCTTAGAACCAGTGTCTGCTGATGCGGAGCGCTTCAACACCTCCTCCACATCTCTTGTATCAGACTCTATGCTCTGCTTCAAGATGCTGTTCGGTGCGTGTCCAGTGTGtgttctcttcttctctcttctctcctccaTCTGTGTGTACTGCTTCTGTCAGAGGAAAACTACAGGTTCTGGAATGCTGACTGAGAATGGACGTGATGAGGGTGGTGAAGTGTGCTATGCCTCATTGGACATGCCTTCCATAcagcaaaaaatgcaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2882 lncRNA upstream 288302 8740832 ~ 8742521 (+) True G1979
TU2880 lncRNA upstream 300429 8730057 ~ 8730394 (+) True G1977
TU2873 lncRNA upstream 316788 8712174 ~ 8714035 (+) True G1971
TU2866 lncRNA upstream 333413 8695957 ~ 8697410 (+) True G1968
TU2833 lncRNA upstream 396424 8631472 ~ 8634399 (+) False ppp2r2ca
XR_006251927.1 lncRNA downstream 20085 9051908 ~ 9053473 (+) True LOC122352814
XR_006252042.1 lncRNA downstream 30138 9061961 ~ 9062609 (+) True LOC122353659
TU3114 lncRNA downstream 752395 9784218 ~ 9787161 (+) True G2149
TU3213 lncRNA downstream 1047062 10078885 ~ 10079470 (+) True G2219
TU3247 lncRNA downstream 1341139 10372962 ~ 10373847 (+) True G2246
XM_043246377.1 mRNA upstream 228199 8800317 ~ 8802624 (+) True LOC122350130
XM_043236629.1 mRNA upstream 250659 8762139 ~ 8780164 (+) True LOC122342651
XM_043228024.1 mRNA upstream 324950 8700459 ~ 8705873 (+) True stim2a
XM_043227086.1 mRNA upstream 336274 8691140 ~ 8694549 (+) True rbpja
XM_043230871.1 mRNA upstream 344278 8680589 ~ 8686545 (+) True slc34a2a
XM_043250318.1 mRNA downstream 11674 9043497 ~ 9044968 (+) True LOC122352717
XM_043250406.1 mRNA downstream 11674 9043497 ~ 9044968 (+) False LOC122352717
XM_043247536.1 mRNA downstream 166061 9197884 ~ 9229837 (+) True pcdh7a
XM_043247547.1 mRNA downstream 202203 9234026 ~ 9236917 (+) True itln1
XM_043238000.1 mRNA downstream 205870 9237693 ~ 9252170 (+) False hgsnat
TU2886 other upstream 251931 8771108 ~ 8778892 (+) False LOC122342651
TU2848 other upstream 329451 8700440 ~ 8701372 (+) False stim2a
TU2774 other upstream 423109 8606828 ~ 8607714 (+) False cxcl8a
unassigned_transcript_3 other upstream 567479 8463272 ~ 8463344 (+) True trnaa-agc_1
unassigned_transcript_2 other upstream 568372 8462379 ~ 8462451 (+) True trnaa-agc
TU3004 other downstream 3263 9035086 ~ 9035600 (+) True G2063
TU3085 other downstream 376582 9408405 ~ 9412437 (+) True G2125
XR_006252046.1 other downstream 763376 9795199 ~ 9795414 (+) True LOC122353673
XR_006252048.1 other downstream 764391 9796214 ~ 9796429 (+) True LOC122353681
XR_006252049.1 other downstream 765607 9797430 ~ 9797648 (+) True LOC122353686

Expression Profile