RNA id: XR_006252042.1


Basic Information

Item Value
RNA id XR_006252042.1
length 352
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC122353659
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 9061961 ~ 9062609 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gttctctctctcctcactcCTCTCCTCCATCTGTGTGTTCTGCCTCTGTTGTAAGAAATCTACAGATGCTGCGAATGATCAGAAAGACAAGGTAAAAGGTAGAAATACAGCTGAGtgcacTGATGAAGAGGTGTTGTGCATCTTTGGATGTGATTAGCAAGAGACAAAAACAAGGCAAGACAAAGCGAGTGCAGAGCTCTGACTTCAGTACTTACGCTCAGGTCAGAACGTAAACTGAACAGACATCAAATATAACTGAGCTGGATTCTGAAACTGtacaaatataagaaaaagtGAAGTCATTTAAAATCAGAAGGTTATGgccttttaatgtaaaataaaggtaattcCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251927.1 lncRNA upstream 8488 9051908 ~ 9053473 (+) True LOC122352814
XR_006251869.1 lncRNA upstream 30138 9030823 ~ 9031823 (+) True LOC122352408
TU2882 lncRNA upstream 319440 8740832 ~ 8742521 (+) True G1979
TU2880 lncRNA upstream 331567 8730057 ~ 8730394 (+) True G1977
TU2873 lncRNA upstream 347926 8712174 ~ 8714035 (+) True G1971
TU3114 lncRNA downstream 721609 9784218 ~ 9787161 (+) True G2149
TU3213 lncRNA downstream 1016276 10078885 ~ 10079470 (+) True G2219
TU3247 lncRNA downstream 1310353 10372962 ~ 10373847 (+) True G2246
TU3429 lncRNA downstream 1765076 10827685 ~ 10829530 (+) False G2350
TU3428 lncRNA downstream 1772422 10835031 ~ 10837245 (+) True G2350
XM_043250318.1 mRNA upstream 16993 9043497 ~ 9044968 (+) True LOC122352717
XM_043250406.1 mRNA upstream 16993 9043497 ~ 9044968 (+) False LOC122352717
XM_043246377.1 mRNA upstream 259337 8800317 ~ 8802624 (+) True LOC122350130
XM_043236629.1 mRNA upstream 281797 8762139 ~ 8780164 (+) True LOC122342651
XM_043228024.1 mRNA upstream 356088 8700459 ~ 8705873 (+) True stim2a
XM_043247536.1 mRNA downstream 135275 9197884 ~ 9229837 (+) True pcdh7a
XM_043247547.1 mRNA downstream 171417 9234026 ~ 9236917 (+) True itln1
XM_043238000.1 mRNA downstream 175084 9237693 ~ 9252170 (+) False hgsnat
XM_043238008.1 mRNA downstream 175329 9237938 ~ 9252170 (+) True hgsnat
XM_043238020.1 mRNA downstream 190207 9252816 ~ 9264070 (+) True pi4k2b
TU3004 other upstream 26361 9035086 ~ 9035600 (+) True G2063
TU2886 other upstream 283069 8771108 ~ 8778892 (+) False LOC122342651
TU2848 other upstream 360589 8700440 ~ 8701372 (+) False stim2a
TU2774 other upstream 454247 8606828 ~ 8607714 (+) False cxcl8a
unassigned_transcript_3 other upstream 598617 8463272 ~ 8463344 (+) True trnaa-agc_1
TU3085 other downstream 345796 9408405 ~ 9412437 (+) True G2125
XR_006252046.1 other downstream 732590 9795199 ~ 9795414 (+) True LOC122353673
XR_006252048.1 other downstream 733605 9796214 ~ 9796429 (+) True LOC122353681
XR_006252049.1 other downstream 734821 9797430 ~ 9797648 (+) True LOC122353686
TU3224 other downstream 1182548 10245157 ~ 10245578 (+) True G2230

Expression Profile