RNA id: XR_006252046.1


Basic Information

Item Value
RNA id XR_006252046.1
length 216
RNA type snoRNA
GC content 0.43
exon number 1
gene id LOC122353673
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 9795199 ~ 9795414 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGACTATACTTTCAGGGATCATTTCTATAGTTTCTAACTTGGAAATGTGTTTCGAAAGTGTTAGGCCTCCCAAACCACGATGATGAGCTTTGATGCTCCTTTCTGAGCGTGAATCGGATGTAGAGTAATGATTCATTTCATACGCTTTATATCATTGATGAACGTTCCTCGTTGTTTCACCGCAGCGAGGAGGAAAGGGGCATGAGCAGAGTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3114 lncRNA upstream 8038 9784218 ~ 9787161 (+) True G2149
XR_006252042.1 lncRNA upstream 732590 9061961 ~ 9062609 (+) True LOC122353659
XR_006251927.1 lncRNA upstream 741726 9051908 ~ 9053473 (+) True LOC122352814
XR_006251869.1 lncRNA upstream 763376 9030823 ~ 9031823 (+) True LOC122352408
TU2882 lncRNA upstream 1052678 8740832 ~ 8742521 (+) True G1979
TU3213 lncRNA downstream 283471 10078885 ~ 10079470 (+) True G2219
TU3247 lncRNA downstream 577548 10372962 ~ 10373847 (+) True G2246
TU3429 lncRNA downstream 1032271 10827685 ~ 10829530 (+) False G2350
TU3428 lncRNA downstream 1039617 10835031 ~ 10837245 (+) True G2350
TU3431 lncRNA downstream 1042211 10837625 ~ 10838465 (+) True G2352
XM_043248715.1 mRNA upstream 1003 9771041 ~ 9794196 (+) False micu3a
XM_043248734.1 mRNA upstream 1003 9771041 ~ 9794196 (+) False micu3a
XM_043248711.1 mRNA upstream 1003 9771042 ~ 9794196 (+) True micu3a
XM_043248752.1 mRNA upstream 1003 9771042 ~ 9794196 (+) False micu3a
XM_043248761.1 mRNA upstream 1003 9771043 ~ 9794196 (+) False micu3a
XM_043241164.1 mRNA downstream 4412 9799826 ~ 9805483 (+) True vps37a
XM_043236706.1 mRNA downstream 31689 9827103 ~ 9863686 (+) True mtus1b
XM_043245813.1 mRNA downstream 70750 9866164 ~ 9888659 (+) True pcm1
XM_043246000.1 mRNA downstream 70750 9866164 ~ 9888659 (+) False pcm1
XM_043245884.1 mRNA downstream 70750 9866164 ~ 9888659 (+) False pcm1
TU3085 other upstream 382762 9408405 ~ 9412437 (+) True G2125
TU3004 other upstream 759599 9035086 ~ 9035600 (+) True G2063
TU2886 other upstream 1016307 8771108 ~ 8778892 (+) False LOC122342651
TU2848 other upstream 1093827 8700440 ~ 8701372 (+) False stim2a
TU2774 other upstream 1187485 8606828 ~ 8607714 (+) False cxcl8a
XR_006252048.1 other downstream 800 9796214 ~ 9796429 (+) True LOC122353681
XR_006252049.1 other downstream 2016 9797430 ~ 9797648 (+) True LOC122353686
TU3224 other downstream 449743 10245157 ~ 10245578 (+) True G2230
XR_006251239.1 other downstream 461248 10256662 ~ 10333672 (+) False fat1a
XR_006251240.1 other downstream 461248 10256662 ~ 10333672 (+) False fat1a

Expression Profile