RNA id: unassigned_transcript_10



Basic Information


Item Value
RNA id unassigned_transcript_10
length 73
RNA type tRNA
GC content 0.54
exon number 1
gene id trnar-ucg_2
representative True

Chromosome Information


Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 13222551 ~ 13222623 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ggcccagtggcctaatggataaggcatcagccttcggagctgaggattgtgggttcgagtcccatctgggtca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU4410 lncRNA downstream 15725 13205787 ~ 13206826 (-) True G3070
TU4359 lncRNA downstream 249539 12969093 ~ 12973012 (-) True smim18
TU4338 lncRNA downstream 334898 12886776 ~ 12887653 (-) True G3020
TU4173 lncRNA downstream 604509 12617768 ~ 12618042 (-) True G2891
TU4170 lncRNA downstream 627257 12592441 ~ 12595294 (-) True G2889
TU4414 lncRNA upstream 72074 13294697 ~ 13295015 (-) True G3074
TU4420 lncRNA upstream 80130 13302753 ~ 13313529 (-) True G3080
TU4437 lncRNA upstream 167452 13390075 ~ 13390345 (-) True G3093
TU4438 lncRNA upstream 168442 13391065 ~ 13391301 (-) True G3094
TU4439 lncRNA upstream 168932 13391555 ~ 13391885 (-) True G3095
XM_043243582.1 mRNA downstream 32789 13168159 ~ 13189762 (-) True pds5a
XM_043243590.1 mRNA downstream 32932 13168159 ~ 13189619 (-) False pds5a
XM_043243596.1 mRNA downstream 33172 13168159 ~ 13189379 (-) False pds5a
XM_043244004.1 mRNA downstream 63107 13156838 ~ 13159444 (-) False smim14
XM_043243982.1 mRNA downstream 63273 13154486 ~ 13159278 (-) True smim14
XM_043238283.1 mRNA upstream 176218 13398841 ~ 13422240 (-) False fam184b
XM_043238277.1 mRNA upstream 176218 13398841 ~ 13422238 (-) True fam184b
XM_043250221.1 mRNA upstream 211594 13434217 ~ 13451163 (-) True lcorl
XM_043250215.1 mRNA upstream 213274 13435897 ~ 13451163 (-) False lcorl
XM_043250226.1 mRNA upstream 218663 13441286 ~ 13451163 (-) False lcorl
unassigned_transcript_9 other downstream 897 13221582 ~ 13221654 (-) True trnar-ucu
unassigned_transcript_8 other downstream 1678 13220800 ~ 13220873 (-) True trnae-cuc
unassigned_transcript_7 other downstream 3183 13219296 ~ 13219368 (-) True trnar-ucg_1
unassigned_transcript_6 other downstream 4083 13218394 ~ 13218468 (-) True trnar-ucg
TU4379 other downstream 63305 13154486 ~ 13159246 (-) False smim14
unassigned_transcript_11 other upstream 902 13223525 ~ 13223598 (-) True trnae-cuc_1
unassigned_transcript_12 other upstream 2194 13224817 ~ 13224887 (-) True trnaq-uug
unassigned_transcript_13 other upstream 2518 13225141 ~ 13225213 (-) True trnar-ucg_3
unassigned_transcript_14 other upstream 3025 13225648 ~ 13225720 (-) True trnar-ccg
unassigned_transcript_15 other upstream 3296 13225919 ~ 13225991 (-) True trnar-ucg_4

Expression Profile