RNA id: unassigned_transcript_101


Basic Information

Item Value
RNA id unassigned_transcript_101
length 82
RNA type tRNA
GC content 0.59
exon number 1
gene id trnas-aga
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 18578750 ~ 18578831 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTtgtcgtggccgagtggttaaggcgatggactagaaatccattggggtctccccgcgcaggttcgaatcctgccgacaaCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6140 lncRNA upstream 267409 18309934 ~ 18311341 (+) True G4296
TU5942 lncRNA upstream 363666 18213305 ~ 18215084 (+) True G4166
TU5832 lncRNA upstream 680206 17896588 ~ 17898544 (+) False lsm6
TU5873 lncRNA upstream 831651 17745851 ~ 17747099 (+) True G4105
TU5867 lncRNA upstream 931288 17644218 ~ 17647462 (+) True G4099
TU6182 lncRNA downstream 19525 18598356 ~ 18599659 (+) True G4331
XR_006250297.1 lncRNA downstream 115338 18694169 ~ 18717089 (+) True LOC122340556
TU6214 lncRNA downstream 115352 18694183 ~ 18694573 (+) False LOC122340556
TU6197 lncRNA downstream 127378 18706209 ~ 18708429 (+) True G4345
TU6217 lncRNA downstream 136116 18714947 ~ 18715231 (+) True G4356
XM_043241787.1 mRNA upstream 1163 18431138 ~ 18577587 (+) False galntl6
XM_043241715.1 mRNA upstream 1163 18431140 ~ 18577587 (+) True galntl6
XM_043237260.1 mRNA upstream 251889 18304771 ~ 18326861 (+) True sparcl1
XM_043237245.1 mRNA upstream 251889 18319781 ~ 18326861 (+) False sparcl1
XM_043237253.1 mRNA upstream 251889 18320632 ~ 18326861 (+) False sparcl1
XM_043233850.1 mRNA downstream 5325 18584156 ~ 18597637 (+) True galnt7
XM_043233840.1 mRNA downstream 5327 18584158 ~ 18597637 (+) False galnt7
XM_043233897.1 mRNA downstream 108486 18687317 ~ 18693388 (+) True cep44
XM_043233886.1 mRNA downstream 108951 18687782 ~ 18693388 (+) False cep44
XM_043233907.1 mRNA downstream 108986 18687817 ~ 18693388 (+) False cep44
XR_006251260.1 other upstream 295989 18247250 ~ 18282761 (+) False dclk2a
XR_006251261.1 other upstream 295989 18247252 ~ 18282761 (+) False dclk2a
XR_006251846.1 other upstream 969909 17573121 ~ 17608841 (+) False gab1
TU5228 other upstream 2925369 15653093 ~ 15653381 (+) True G3647
TU5171 other upstream 3080070 15478098 ~ 15498680 (+) True G3599
TU6436 other downstream 942253 19521084 ~ 19522399 (+) True G4528
unassigned_transcript_103 other downstream 1533611 20112442 ~ 20112514 (+) True trnak-cuu
TU7127 other downstream 2742634 21321465 ~ 21361275 (+) False LOC122348864
TU7152 other downstream 3012046 21590877 ~ 21620580 (+) False rnf24
TU7172 other downstream 3053384 21632215 ~ 21635052 (+) True G5037