RNA id: unassigned_transcript_13



Basic Information


Item Value
RNA id unassigned_transcript_13
length 73
RNA type tRNA
GC content 0.59
exon number 1
gene id trnar-ucg_3
representative True

Chromosome Information


Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 13225141 ~ 13225213 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ggcccagtggcctaatggataaggcatcagccttcggagctgaggattgtgggttcgagtcccatctgggtca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU4410 lncRNA downstream 18315 13205787 ~ 13206826 (-) True G3070
TU4359 lncRNA downstream 252129 12969093 ~ 12973012 (-) True smim18
TU4338 lncRNA downstream 337488 12886776 ~ 12887653 (-) True G3020
TU4173 lncRNA downstream 607099 12617768 ~ 12618042 (-) True G2891
TU4170 lncRNA downstream 629847 12592441 ~ 12595294 (-) True G2889
TU4414 lncRNA upstream 69484 13294697 ~ 13295015 (-) True G3074
TU4420 lncRNA upstream 77540 13302753 ~ 13313529 (-) True G3080
TU4437 lncRNA upstream 164862 13390075 ~ 13390345 (-) True G3093
TU4438 lncRNA upstream 165852 13391065 ~ 13391301 (-) True G3094
TU4439 lncRNA upstream 166342 13391555 ~ 13391885 (-) True G3095
XM_043243582.1 mRNA downstream 35379 13168159 ~ 13189762 (-) True pds5a
XM_043243590.1 mRNA downstream 35522 13168159 ~ 13189619 (-) False pds5a
XM_043243596.1 mRNA downstream 35762 13168159 ~ 13189379 (-) False pds5a
XM_043244004.1 mRNA downstream 65697 13156838 ~ 13159444 (-) False smim14
XM_043243982.1 mRNA downstream 65863 13154486 ~ 13159278 (-) True smim14
XM_043238283.1 mRNA upstream 173628 13398841 ~ 13422240 (-) False fam184b
XM_043238277.1 mRNA upstream 173628 13398841 ~ 13422238 (-) True fam184b
XM_043250221.1 mRNA upstream 209004 13434217 ~ 13451163 (-) True lcorl
XM_043250215.1 mRNA upstream 210684 13435897 ~ 13451163 (-) False lcorl
XM_043250226.1 mRNA upstream 216073 13441286 ~ 13451163 (-) False lcorl
unassigned_transcript_12 other downstream 254 13224817 ~ 13224887 (-) True trnaq-uug
unassigned_transcript_11 other downstream 1543 13223525 ~ 13223598 (-) True trnae-cuc_1
unassigned_transcript_10 other downstream 2518 13222551 ~ 13222623 (-) True trnar-ucg_2
unassigned_transcript_9 other downstream 3487 13221582 ~ 13221654 (-) True trnar-ucu
unassigned_transcript_8 other downstream 4268 13220800 ~ 13220873 (-) True trnae-cuc
unassigned_transcript_14 other upstream 435 13225648 ~ 13225720 (-) True trnar-ccg
unassigned_transcript_15 other upstream 706 13225919 ~ 13225991 (-) True trnar-ucg_4
unassigned_transcript_16 other upstream 1968 13227181 ~ 13227253 (-) True trnar-ucg_5
unassigned_transcript_17 other upstream 18883 13244096 ~ 13244170 (-) True trnaw-cca
unassigned_transcript_18 other upstream 23267 13248480 ~ 13248552 (-) True trnar-ccg_1