RNA id: unassigned_transcript_2


Basic Information

Item Value
RNA id unassigned_transcript_2
length 73
RNA type tRNA
GC content 0.61
exon number 1
gene id trnaa-agc
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 8462379 ~ 8462451 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggggaattagctcaaatggtagagcgctcgcttagcatgcgagaggtagcgggatcgatgcccgcattctcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2668 lncRNA upstream 476764 7954711 ~ 7985615 (+) False pcdh10a
TU2551 lncRNA upstream 648728 7812153 ~ 7813651 (+) True G1754
TU2550 lncRNA upstream 651025 7810983 ~ 7811354 (+) True G1753
TU2547 lncRNA upstream 653158 7808303 ~ 7809221 (+) True G1750
TU2549 lncRNA upstream 654365 7807351 ~ 7808014 (+) True G1752
TU2752 lncRNA downstream 63130 8525581 ~ 8578361 (+) True G1902
TU2833 lncRNA downstream 169021 8631472 ~ 8634399 (+) False ppp2r2ca
TU2866 lncRNA downstream 233506 8695957 ~ 8697410 (+) True G1968
TU2873 lncRNA downstream 249723 8712174 ~ 8714035 (+) True G1971
TU2880 lncRNA downstream 267606 8730057 ~ 8730394 (+) True G1977
XM_043247758.1 mRNA upstream 477240 7966691 ~ 7985139 (+) True pcdh10a
XM_043247764.1 mRNA upstream 477240 7966692 ~ 7985139 (+) False pcdh10a
XM_043247750.1 mRNA upstream 479567 7966691 ~ 7982812 (+) False pcdh10a
XM_043248903.1 mRNA upstream 641031 7818423 ~ 7821348 (+) False c1h4orf33
XM_043248893.1 mRNA upstream 641031 7818733 ~ 7821348 (+) True c1h4orf33
XM_043249925.1 mRNA downstream 1380 8463831 ~ 8471506 (+) False noctb
XM_043249916.1 mRNA downstream 4824 8467275 ~ 8471506 (+) True noctb
XM_043238746.1 mRNA downstream 38223 8500674 ~ 8505353 (+) True LOC122344791
XM_043236617.1 mRNA downstream 43148 8505599 ~ 8566094 (+) True ank2a
XM_043236886.1 mRNA downstream 144374 8606825 ~ 8607785 (+) True cxcl8a
TU2530 other upstream 740954 7720319 ~ 7721425 (+) False spink4
TU2312 other upstream 1310159 7147137 ~ 7152220 (+) True mpc2a
XR_006251795.1 other upstream 1603811 6846500 ~ 6858568 (+) False LOC122351737
TU2119 other upstream 1616831 6711635 ~ 6845548 (+) True G1447
TU2148 other upstream 1680238 6779618 ~ 6782141 (+) False rgs11
unassigned_transcript_3 other downstream 821 8463272 ~ 8463344 (+) True trnaa-agc_1
TU2774 other downstream 144377 8606828 ~ 8607714 (+) False cxcl8a
TU2848 other downstream 237989 8700440 ~ 8701372 (+) False stim2a
TU2886 other downstream 308657 8771108 ~ 8778892 (+) False LOC122342651
TU3004 other downstream 572635 9035086 ~ 9035600 (+) True G2063

Expression Profile