RNA id: unassigned_transcript_20



Basic Information


Item Value
RNA id unassigned_transcript_20
length 73
RNA type tRNA
GC content 0.54
exon number 1
gene id trnar-ucg_7
representative True

Chromosome Information


Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 13249407 ~ 13249479 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ggcccagtggcctaatggataaggcatcagccttcggagctgaggattgtgggttcgagtcccatctgggtca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU4410 lncRNA downstream 42581 13205787 ~ 13206826 (-) True G3070
TU4359 lncRNA downstream 276395 12969093 ~ 12973012 (-) True smim18
TU4338 lncRNA downstream 361754 12886776 ~ 12887653 (-) True G3020
TU4173 lncRNA downstream 631365 12617768 ~ 12618042 (-) True G2891
TU4170 lncRNA downstream 654113 12592441 ~ 12595294 (-) True G2889
TU4414 lncRNA upstream 45218 13294697 ~ 13295015 (-) True G3074
TU4420 lncRNA upstream 53274 13302753 ~ 13313529 (-) True G3080
TU4437 lncRNA upstream 140596 13390075 ~ 13390345 (-) True G3093
TU4438 lncRNA upstream 141586 13391065 ~ 13391301 (-) True G3094
TU4439 lncRNA upstream 142076 13391555 ~ 13391885 (-) True G3095
XM_043243582.1 mRNA downstream 59645 13168159 ~ 13189762 (-) True pds5a
XM_043243590.1 mRNA downstream 59788 13168159 ~ 13189619 (-) False pds5a
XM_043243596.1 mRNA downstream 60028 13168159 ~ 13189379 (-) False pds5a
XM_043244004.1 mRNA downstream 89963 13156838 ~ 13159444 (-) False smim14
XM_043243982.1 mRNA downstream 90129 13154486 ~ 13159278 (-) True smim14
XM_043238283.1 mRNA upstream 149362 13398841 ~ 13422240 (-) False fam184b
XM_043238277.1 mRNA upstream 149362 13398841 ~ 13422238 (-) True fam184b
XM_043250221.1 mRNA upstream 184738 13434217 ~ 13451163 (-) True lcorl
XM_043250215.1 mRNA upstream 186418 13435897 ~ 13451163 (-) False lcorl
XM_043250226.1 mRNA upstream 191807 13441286 ~ 13451163 (-) False lcorl
unassigned_transcript_19 other downstream 575 13248760 ~ 13248832 (-) True trnar-ucg_6
unassigned_transcript_18 other downstream 855 13248480 ~ 13248552 (-) True trnar-ccg_1
unassigned_transcript_17 other downstream 5237 13244096 ~ 13244170 (-) True trnaw-cca
unassigned_transcript_16 other downstream 22154 13227181 ~ 13227253 (-) True trnar-ucg_5
unassigned_transcript_15 other downstream 23416 13225919 ~ 13225991 (-) True trnar-ucg_4
unassigned_transcript_21 other upstream 580 13250059 ~ 13250131 (-) True trnar-ucg_8
unassigned_transcript_22 other upstream 1092 13250571 ~ 13250642 (-) True trnar-ccg_2
unassigned_transcript_23 other upstream 2462 13251941 ~ 13252013 (-) True trnar-ucg_9
unassigned_transcript_24 other upstream 2786 13252265 ~ 13252338 (-) True trnae-cuc_2
unassigned_transcript_25 other upstream 3293 13252772 ~ 13252844 (-) True trnar-ccg_3