RNA id: XR_006251884.1



Basic Information


Item Value
RNA id XR_006251884.1
length 616
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id LOC122352556
representative True

Chromosome Information


Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 265490 ~ 266417 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AGAATGAGGAAGGGTGCGGAGTCGAAATAGAGCTCCTGATTAAGGGAAATATACTTTACAAAAGTAGagtaaagattttgtttttgtagtgaTTCAAGAGGGGAGATTTTGATTGATAACATCCAGTAATTATTTTCGTTTCAaaggattttgttttttgagtttcGCGAGGGAATACTGGATATGGttggatgttttctttgatgGGAGCTGACCGAATCGAGTCTGAGAGGAGACCAGAGTTACCAGAACTGGAAATGTACCTTTTTAAGGATTTCAGAAGACATTGTGGACAGTGATCTACTGCTACGTCGTTGGATTTGAGATAAGTGATTGAGAACTGATCTCAAAAGATTTGAACAGGTTTGAACCTACTCCAGAAAGAGGATATATTTAGTACAGTGAATGTGGATTATAGTTAATTCATTGTGTGAGTAACAGAGAGTATACCACCAAGGATTCATTTGAGTaccagtgttattttcatttcaattttatattggaatctgttttatttacgttgtgatttgtttattttttcttttattttgttttattatgttttatatacttaGGGGggtaatttgattaaaagtatACTTGCTATAAAACCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU108676 lncRNA downstream 197017 53936 ~ 68473 (-) True G73453
TU108769 lncRNA upstream 18592 285009 ~ 285222 (-) True G73515
TU108763 lncRNA upstream 24749 291166 ~ 292261 (-) True G73510
TU108783 lncRNA upstream 62860 329277 ~ 329901 (-) True G73518
TU108822 lncRNA upstream 69341 335758 ~ 336393 (-) True G73550
TU108851 lncRNA upstream 238023 504440 ~ 506118 (-) True G73570
XM_043250913.1 mRNA downstream 39281 210872 ~ 226209 (-) True slc27a6
XM_043250914.1 mRNA downstream 39288 210872 ~ 226202 (-) False slc27a6
XM_043250885.1 mRNA downstream 55143 204696 ~ 210347 (-) False isoc1
XM_043250887.1 mRNA downstream 55143 205991 ~ 210347 (-) False isoc1
XM_043250886.1 mRNA downstream 55143 205991 ~ 210347 (-) True isoc1
XM_043250437.1 mRNA upstream 26775 293192 ~ 332004 (-) False slc12a2
XM_043250435.1 mRNA upstream 26775 293192 ~ 332004 (-) True slc12a2
XM_043249954.1 mRNA upstream 76372 342789 ~ 348073 (-) True LOC122352523
XM_043250321.1 mRNA upstream 82997 349414 ~ 358819 (-) False prrc1
XM_043250320.1 mRNA upstream 82997 349414 ~ 358819 (-) True prrc1
TU108681 other downstream 174194 40690 ~ 91296 (-) False LOC122353100
XR_006251919.1 other upstream 97260 363677 ~ 396619 (-) False megf10
TU109011 other upstream 427031 693448 ~ 695778 (-) False G73662
TU109012 other upstream 427031 693448 ~ 766346 (-) False G73662
TU109014 other upstream 427031 693448 ~ 695778 (-) True G73662
TU109045 other upstream 523006 789423 ~ 793724 (-) True G73687

Expression Profile