RNA id: TU108786


Basic Information

Item Value
RNA id TU108786
length 1535
lncRNA type sense_over
GC content 0.47
exon number 2
gene id G73519
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 349033 ~ 397101 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGGAAAGTACCGCCACCTTGTGAAACTAATGATTACTGCAAAATATCTCCAATGCTCCAAAAAACGTGAAGCAAATCGTCTCAGAAGGAAGGAAGGATTCTTGGCTTGGTGGTTGGCATCACTTTATTCGTAACTATTCTgagctcttaaaaaaaaacaaggcttgTGTCTCTAGAACGCCAACAATCATTTGAACTAAAGGAAGCGCTGCAAAAACCTACCAGTTCGTCCAGATTTGGGTCAGCGCTTCGACTTTGGGTTCTGGAGAACTGATAGCACTGACGTGCAGCTCATTCTCCAACGAAGCCATCATTTCTGATGCAAAGACGTACTTGTCATGTAACGCACCTCTCATCGTTGTCGGTTGGTAAAACTGTTCTCTCATTGGCCACAAAAAATTACATGACATTTCAGCACAACAGTTTGAGGTGGGTTCCCCCAAAACTCTTATGATGAGCGCTTCCTCAAGACACGGACCACATGCcagaaacacaacagaaaaacaTGATGCTATACAAAAAGGTTTTACTCTTTTGCTGGTCAAAGGCACGTTTGTAAAATGCTATGGAATAAAATCATCCACAGTTGTTCTGGAGAAATCTTACAAACATTTGAAGACACTTTTAAAGGCAGTTCTAGATTTGTCATCAAACAGAGAATGTGCTGATCATCCGAGGTCAAGCTCCTGCAGCCGTGATCCTGCTGCTCTTCATCGCCGACGCTCGTCTGCCTCACATCTACAGACACAGAGCTGGTGATCGACAGCAGAAGAAGACACGGACATGCAGACAAACAGCGCTCTAACAATGCTTGAGGATTACGCTGAAACCATATAAAATAGGATCCAAAACCGTAacatcaaaattatatattcacaatatCGATATGAACCtcagtttgattaaaaaatattggaTCGTGAATGTAAACACCACCTTTCCCCGGATGAGCTCTGATCATCTGAAGGAGAGCAAACGACTGGGGGTCAATTATTAATATCGCTCAAACTCAATGTAATATTCAATTCAACCAATAATTTAATAGTTAGAGTTATTCTAGCCTGTGACTGGTTTAGTTCAGATCCGCTCGGTTTGTTTTGGCGTTTAGAGCGGGCTCAGGGACTGAGATGGAGCGCGGGTCCGGTGGGATTCTGGGAAGCTGTGGTCCGTGTCACGTTCACACTGTCCTGGACGGCAAGCGCTGTTTGTACATCCCTGCCAGGGCCTTAGCGGCGGAGTAGATCATCTGACGGCGGGACATGCCCGTGAAGGCCTGGTGCCAGTCCGAGCGGCTGATGTTCGGCACGCTTCTCTCCAGAACCTCCCCGACCGTCACCAGCAGACCGGACCAGCGCAGGTTATAATCCGGAGGAGTCAGCGCCTGAGCCtggacacacacgcacacacacggacacacacggacacacacacacgcgcacacgcacacacgcacgcacggacacacgcacacacggacacacacacacacggacacacacacacacacacacacacacacacacacacacacacgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108794 lncRNA upstream 1401 347548 ~ 347907 (+) True G73523
TU108697 lncRNA upstream 57041 287869 ~ 292267 (+) True G73465
TU108732 lncRNA upstream 64636 282579 ~ 284672 (+) False LOC122352377
TU108731 lncRNA upstream 66803 281668 ~ 282505 (+) False LOC122352377
TU108730 lncRNA upstream 67768 279737 ~ 281540 (+) False LOC122352377
TU108811 lncRNA downstream 629 397730 ~ 398856 (+) False c10h5orf63
TU108834 lncRNA downstream 27852 424953 ~ 427515 (+) True G73559
TU108837 lncRNA downstream 31755 428856 ~ 429270 (+) True G73560
TU108886 lncRNA downstream 255443 652544 ~ 653003 (+) True G73589
TU108885 lncRNA downstream 256513 653614 ~ 673309 (+) True G73588
XM_043249792.1 mRNA upstream 63068 242243 ~ 286240 (+) True LOC122352377
XM_043250977.1 mRNA upstream 112002 227186 ~ 237306 (+) True LOC122353112
XM_043250978.1 mRNA upstream 113162 227167 ~ 236146 (+) False LOC122353112
XM_043251180.1 mRNA upstream 255104 93311 ~ 94204 (+) True LOC122353215
XM_043250898.1 mRNA downstream 15792 412893 ~ 420454 (+) True aldh7a1
XM_043249978.1 mRNA downstream 107259 504360 ~ 506120 (+) True sub1a
XM_043250440.1 mRNA downstream 110503 507604 ~ 515636 (+) True pstpip2
XM_043250441.1 mRNA downstream 110503 507604 ~ 515636 (+) False pstpip2
XM_043250971.1 mRNA downstream 139307 536408 ~ 564154 (+) True mtrex
TU108810 other downstream 1167 398268 ~ 398856 (+) False c10h5orf63
TU108992 other downstream 296099 693200 ~ 695923 (+) True isl1b
TU109131 other downstream 536968 934069 ~ 945853 (+) True rbm18
TU109829 other downstream 1714095 2111196 ~ 2111694 (+) True G74226
TU109752 other downstream 1796996 2194097 ~ 2200467 (+) True G74171

Expression Profile