RNA id: TU108811


Basic Information

Item Value
RNA id TU108811
length 432
lncRNA type sense_over
GC content 0.49
exon number 3
gene id c10h5orf63
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 396440 ~ 398859 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGGACAGCTTCCGTTCCGGCGCGTGATTATCGTCATTGgaGCCGTGTCCTCTCTGTGATGAAGCCAAAGCAGCTCTGGAGCCCTACAGACACAGAtttgAGCTGCAGGAGGTGGACATCTCTCTGCCGGAGAACAGAGTCTGGTTGGACCGGTACCGTCTCCACATCCCCGTCTTTCACCTGAACGGAGAGTTTCTGATGCAGCACCGCGTGAACACAGAGCTCCTGGAGAGACGTCTGGAGAAGATCTGCTCTCCATCACCTTCAGGCGGCTCATCCTGAAACATTACCCACAATCCTCTGCACTCAGGAGTTAATGGGAAATGAGCtatcaaaaataatacatttgagaCAAAAGCAGATGTTTCCTGCAGTTTTGATGAAGCACTGGCGGATGGGATTATACCtggattaaaataaagtatttttcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108786 lncRNA upstream 629 349308 ~ 397101 (+) False G73519
TU108787 lncRNA upstream 2671 349308 ~ 395059 (+) False G73519
TU108788 lncRNA upstream 45424 349033 ~ 352306 (+) True G73519
TU108794 lncRNA upstream 49823 347548 ~ 347907 (+) True G73523
TU108697 lncRNA upstream 105463 287869 ~ 292267 (+) True G73465
TU108834 lncRNA downstream 26097 424953 ~ 427515 (+) True G73559
TU108837 lncRNA downstream 30000 428856 ~ 429270 (+) True G73560
TU108886 lncRNA downstream 253688 652544 ~ 653003 (+) True G73589
TU108885 lncRNA downstream 254758 653614 ~ 673309 (+) True G73588
TU108988 lncRNA downstream 284311 683167 ~ 774374 (+) False pmaip1
XM_043249792.1 mRNA upstream 111490 242243 ~ 286240 (+) True LOC122352377
XM_043250977.1 mRNA upstream 160424 227186 ~ 237306 (+) True LOC122353112
XM_043250978.1 mRNA upstream 161584 227167 ~ 236146 (+) False LOC122353112
XM_043251180.1 mRNA upstream 303526 93311 ~ 94204 (+) True LOC122353215
XM_043250898.1 mRNA downstream 14037 412893 ~ 420454 (+) True aldh7a1
XM_043249978.1 mRNA downstream 105504 504360 ~ 506120 (+) True sub1a
XM_043250440.1 mRNA downstream 108748 507604 ~ 515636 (+) True pstpip2
XM_043250441.1 mRNA downstream 108748 507604 ~ 515636 (+) False pstpip2
XM_043250971.1 mRNA downstream 137552 536408 ~ 564154 (+) True mtrex
TU108992 other downstream 294344 693200 ~ 695923 (+) True isl1b
TU109131 other downstream 535213 934069 ~ 945853 (+) True rbm18
TU109829 other downstream 1712340 2111196 ~ 2111694 (+) True G74226
TU109752 other downstream 1795241 2194097 ~ 2200467 (+) True G74171
TU110053 other downstream 2190289 2589145 ~ 2705339 (+) False cntfr

Expression Profile