RNA id: TU108935


Basic Information

Item Value
RNA id TU108935
length 369
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G73619
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 549195 ~ 550288 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

caCAGGCTTCATGTTCAGGAGTGTGTTAATGAACACCGAGCGAGCCGAAGCTCAGAGAGGGAGAAGGGCTTGAGGTTTAAAGCAGAGTTTCAGTGTTACCTTCAGTAACTGTTTGCCCACCGCTGGACTCATCTTCTCATCCACCATGAAGATGACTATCCCCCTCTCGTCCATTCCTCTTCTGCCAGCACGTCCTGACATCTGGATATACTCTCCCGAGGTGATCTAACGTGGAGGAATGGGGGAGAAGAGAAGAATTTTACTTTACTGAAACATTtggggaaaggaaaaaaagcaaataccGGAAATAAAACATCTTGACTGGTCAAAGACGACATGACCCACACAGCGACCCGCAGCTGACCCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108926 lncRNA downstream 24325 524290 ~ 524870 (-) True G73613
TU108851 lncRNA downstream 43077 504440 ~ 506118 (-) True G73570
TU108822 lncRNA downstream 212802 335758 ~ 336393 (-) True G73550
TU108783 lncRNA downstream 219294 329277 ~ 329901 (-) True G73518
TU108763 lncRNA downstream 256934 291166 ~ 292261 (-) True G73510
TU108941 lncRNA upstream 27772 578060 ~ 579146 (-) True G73623
TU108942 lncRNA upstream 27772 578060 ~ 579146 (-) False G73623
TU108945 lncRNA upstream 77490 627778 ~ 635728 (-) False G73624
TU108950 lncRNA upstream 77490 627778 ~ 635728 (-) False G73624
TU108946 lncRNA upstream 80045 630333 ~ 633951 (-) True G73624
XM_043250438.1 mRNA downstream 13236 521051 ~ 535959 (-) True dhx29
XM_043250439.1 mRNA downstream 13236 522029 ~ 535959 (-) False dhx29
XM_043250442.1 mRNA downstream 28255 515783 ~ 520940 (-) True LOC122352790
XM_043250359.1 mRNA downstream 116553 421501 ~ 432642 (-) False apbb1
XM_043250358.1 mRNA downstream 116553 421501 ~ 432642 (-) True apbb1
XM_043250973.1 mRNA upstream 13771 564059 ~ 577223 (-) False plpp1a
XM_043250972.1 mRNA upstream 13771 564059 ~ 577221 (-) False plpp1a
XM_043250976.1 mRNA upstream 13771 564059 ~ 574508 (-) False plpp1a
XM_043250975.1 mRNA upstream 13771 564059 ~ 574342 (-) True plpp1a
XM_043250740.1 mRNA upstream 29015 579303 ~ 611263 (-) True csgalnact1a
XR_006251919.1 other downstream 152576 363677 ~ 396619 (-) False megf10
TU108681 other downstream 457899 40690 ~ 91296 (-) False LOC122353100
TU109011 other upstream 143160 693448 ~ 695778 (-) False G73662
TU109012 other upstream 143160 693448 ~ 766346 (-) False G73662
TU109014 other upstream 143160 693448 ~ 695778 (-) True G73662
TU109045 other upstream 239135 789423 ~ 793724 (-) True G73687
TU109044 other upstream 239405 789693 ~ 793724 (-) False G73687

Expression Profile