RNA id: TU108941


Basic Information

Item Value
RNA id TU108941
length 947
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G73623
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 578060 ~ 579146 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacacagagacacacacacacacacacacacacacacacacacacacagacacacacacacactcacacacacacacacacactcacacatacacacacagacacacacactctctcacacacacactcacacccacATATTCCCTCCAGATAAGTcggtggtgtgtgtgttcagggaaGGACCTTCAGGTCTCTTTGGAGTGAGAAGGTTCTGTAGAGAAGCACTCCATGAGTCTGATGTTCTTCAGCTGATAAAACCTTTATAGTATCTGCTACAAATGACAAGATTTTCtgtctgcttgtttttttaatacaagaGAGAAAATGCCTTATTGCTATTAATGTATAACGTGGTTAGGTCCTTTCTAAGTCGTGaactgatgaagatgaagatgatgatggcCTTAACGCATGCTTGTAGTTTATTACCCTTGATTTATTCATGAAGGGCGCCACCTTGTGACTTCATTTCCTCACAACACCGCTCGAATTCTgagtttgattttaaataattataatatttgggtgacattttatattaaaaactattttgttgtGCCGAATATAACAGTATTTAAGCGATCCTTcgaaatacttttatttgagcACGATTTATAATCTTCAGATTGAGTTTAATTGAGCTGAAGCTGAGGCAGACAGTCAGGTTCATGAAGAGTCAGGAGGAagctctctgtttttctcctaATGCTGTGTAGAATActttaatatcattatttattgGGGGACAGGTTTGTTTTTCGGCCCCAGATCTTGTTTGTgtattctttaaatgttttgttttggaacgatttctttcatttattgtaaaggaaaatatttttgaggacaaagcaaaataaaacgaAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108935 lncRNA downstream 27772 549195 ~ 550288 (-) True G73619
TU108926 lncRNA downstream 53190 524290 ~ 524870 (-) True G73613
TU108851 lncRNA downstream 71942 504440 ~ 506118 (-) True G73570
TU108822 lncRNA downstream 241667 335758 ~ 336393 (-) True G73550
TU108783 lncRNA downstream 248159 329277 ~ 329901 (-) True G73518
TU108945 lncRNA upstream 48632 627778 ~ 635728 (-) False G73624
TU108950 lncRNA upstream 48632 627778 ~ 635728 (-) False G73624
TU108946 lncRNA upstream 51187 630333 ~ 633951 (-) True G73624
TU108981 lncRNA upstream 89189 668335 ~ 668724 (-) True G73643
TU109016 lncRNA upstream 115367 694513 ~ 695778 (-) False G73662
XM_043250973.1 mRNA downstream 837 564059 ~ 577223 (-) False plpp1a
XM_043250972.1 mRNA downstream 839 564059 ~ 577221 (-) False plpp1a
XM_043250976.1 mRNA downstream 3552 564059 ~ 574508 (-) False plpp1a
XM_043250975.1 mRNA downstream 3718 564059 ~ 574342 (-) True plpp1a
XM_043250438.1 mRNA downstream 42101 521051 ~ 535959 (-) True dhx29
XM_043250740.1 mRNA upstream 157 579303 ~ 611263 (-) True csgalnact1a
XM_043250742.1 mRNA upstream 157 579303 ~ 611261 (-) False csgalnact1a
XM_043250741.1 mRNA upstream 157 579303 ~ 611061 (-) False csgalnact1a
XM_043250892.1 mRNA upstream 37884 617030 ~ 622149 (-) False tctn1
XM_043250891.1 mRNA upstream 37884 617030 ~ 622142 (-) True tctn1
XR_006251919.1 other downstream 181441 363677 ~ 396619 (-) False megf10
TU108681 other downstream 486764 40690 ~ 91296 (-) False LOC122353100
TU109011 other upstream 114302 693448 ~ 695778 (-) False G73662
TU109012 other upstream 114302 693448 ~ 766346 (-) False G73662
TU109014 other upstream 114302 693448 ~ 695778 (-) True G73662
TU109045 other upstream 210277 789423 ~ 793724 (-) True G73687
TU109044 other upstream 210547 789693 ~ 793724 (-) False G73687

Expression Profile