RNA id: TU108950


Basic Information

Item Value
RNA id TU108950
length 1114
lncRNA type inter_gene
GC content 0.50
exon number 4
gene id G73624
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 627778 ~ 635728 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagtgtgtgagcgagtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagcgcgcaGACCTCAGTCAGGTCAGACACCAGGGAAATATACTTAGTCTTTACGAAGTGTACAAAGGTCCTAGATCATGTCATTTTCACTAACTTTATTGCGAACAATGGGTTTGATCTCTTGAACTCACTGTAATCTCTAAACCTAAATATGCCACTACTCTGAGTAACGTCTGCAGTCTTTTATAACCAAACTCAACCCTTCTCCTTCCCGCCTCTGAACTTGCAATCCGTCATCCAGGACCTCGAAGCGACGGTGTAGATGAAGGCTGTCTAACTAGAAGTAGATATACCGGCCGAACAGAATTAGCCGGCACGTCCTAAAGCACTTGCGTTTCCCAACAGGTTTAAATCTAGCCAAGCCTCCTTAACTTTAACCTACCTTCCCGTTTCAGgttaacaaaaacacagaggCACTCCAAAGAGATGCTAAACTTCTCTCTCAACACACAGACGACCAAGCATTTAATTTACACAAGCCACCCGCTTCTCCCATTAGAAAACACTTTCTGTGGGTAACGCGTGGCTCAATGACTCAAATTACGACACGGCTTGAAGATTCCCAAAATCCTTTTGGACACAACTGAGGTCATTCTTTTCGGACTGTCTGTACCGCTCATGCTATCCTCCTCCCCGCGCCGACTGGAGATCTACTCGAGAAACGGAAGAATGGAAAGGGATGCTGGGAGAAGTGAGATGGGAGCAGTGCAATAGAGCAGGGGTGGAAGACACGGGAGTAAGAGACGAGCGAGCTCTCAGTCGGTGTACTCCGCCACGATGGACAGAAGCACCGTGATGTCGTCAGGCTTCCCCCCTGGAATCAAAACACACCGAGAACAAGatcCAGTAGAGACAGAAGCACCACGCCCTCTGACCCCGGCGGGGCGATGGACAGCTGGAAGGGAGTGTTGAAGTAGTGCTGCTGCTCGTCTGACCGATGGACCACCTCTCCACCCCGAACCACCAGGAAGCCCGAGTCTCCCAGATTACAGGTGTGTATCCTGTGACTCCGGCGGTCCAGCACCACTATACAAGCTGTGCTGCTCCCTAGAAGAGACGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108941 lncRNA downstream 48632 578060 ~ 579146 (-) True G73623
TU108942 lncRNA downstream 48632 578060 ~ 579146 (-) False G73623
TU108935 lncRNA downstream 77490 549195 ~ 550288 (-) True G73619
TU108926 lncRNA downstream 102908 524290 ~ 524870 (-) True G73613
TU108851 lncRNA downstream 121660 504440 ~ 506118 (-) True G73570
TU108981 lncRNA upstream 32607 668335 ~ 668724 (-) True G73643
TU109016 lncRNA upstream 58785 694513 ~ 695778 (-) False G73662
TU109040 lncRNA upstream 107000 742728 ~ 743650 (-) True G73684
TU109010 lncRNA upstream 128155 763883 ~ 765652 (-) True G73661
TU109062 lncRNA upstream 160232 795960 ~ 796182 (-) True G73704
XM_043250892.1 mRNA downstream 5629 617030 ~ 622149 (-) False tctn1
XM_043250891.1 mRNA downstream 5636 617030 ~ 622142 (-) True tctn1
XM_043250740.1 mRNA downstream 16515 579303 ~ 611263 (-) True csgalnact1a
XM_043250742.1 mRNA downstream 16517 579303 ~ 611261 (-) False csgalnact1a
XM_043250741.1 mRNA downstream 16717 579303 ~ 611061 (-) False csgalnact1a
XM_043250755.1 mRNA upstream 50183 685911 ~ 690128 (-) True golph3b
XM_043250177.1 mRNA upstream 154544 790272 ~ 792344 (-) True LOC122352658
XM_043250178.1 mRNA upstream 156595 792323 ~ 793795 (-) True LOC122352659
XM_043250791.1 mRNA upstream 173324 809052 ~ 842981 (-) False arl15b
XM_043250788.1 mRNA upstream 173324 809052 ~ 842972 (-) False arl15b
XR_006251919.1 other downstream 231159 363677 ~ 396619 (-) False megf10
TU108681 other downstream 536482 40690 ~ 91296 (-) False LOC122353100
TU109011 other upstream 57720 693448 ~ 695778 (-) False G73662
TU109012 other upstream 57720 693448 ~ 766346 (-) False G73662
TU109014 other upstream 57720 693448 ~ 695778 (-) True G73662
TU109045 other upstream 153695 789423 ~ 793724 (-) True G73687
TU109044 other upstream 153965 789693 ~ 793724 (-) False G73687

Expression Profile