RNA id: TU109003


Basic Information

Item Value
RNA id TU109003
length 355
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G73656
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 795335 ~ 795689 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gttagtttagcagaaaatcagcattaGCCTGTGTAGACCTAGGTGTTTATACGTGCATATATCTCTCCGGTGTTAGGACGCTCGCTCTGCTCTCCAGGGTTTAAGGACGGTGTATATAGATCTGTTGCATTGCACTACGAACCATACGTCGTTTTCAGCTCCTCAATGTGTTCCTGCAAGTATTGTAGCAAGTAAAGTACTAATGTCTGATGAGTATTTATGGAGCAGCTCATCTGAACCGGAAGTACAAACACGATCAACTAAAGCACGGTGATCTACGCGAGATGCACAGCTTCTTCCCAGGAGTTTCACATCGAGTCCCTCGTAGTGTAGACGGCCGTAACGCAACACCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108988 lncRNA upstream 20961 683167 ~ 774374 (+) False pmaip1
TU108885 lncRNA upstream 122026 653614 ~ 673309 (+) True G73588
TU108886 lncRNA upstream 142332 652544 ~ 653003 (+) True G73589
TU108837 lncRNA upstream 366065 428856 ~ 429270 (+) True G73560
TU108834 lncRNA upstream 367820 424953 ~ 427515 (+) True G73559
TU109004 lncRNA downstream 457 796146 ~ 796408 (+) False fstb
TU109005 lncRNA downstream 802 796491 ~ 796939 (+) False fstb
TU109068 lncRNA downstream 9681 805370 ~ 805665 (+) True G73710
TU109069 lncRNA downstream 11929 807618 ~ 807846 (+) True G73711
TU109097 lncRNA downstream 59525 855214 ~ 855884 (+) True G73727
XM_043250171.1 mRNA upstream 4700 766692 ~ 790635 (+) True itga2.2
XM_043250172.1 mRNA upstream 4700 766692 ~ 790635 (+) False itga2.2
XM_043250173.1 mRNA upstream 4700 766694 ~ 790635 (+) False itga2.2
XM_043250174.1 mRNA upstream 29666 751480 ~ 765669 (+) True LOC122352656
XM_043250175.1 mRNA upstream 29666 751480 ~ 765669 (+) False LOC122352656
XM_043250786.1 mRNA downstream 322 796011 ~ 801923 (+) True fstb
XM_043250785.1 mRNA downstream 48466 844155 ~ 847891 (+) True snx18b
XM_043250147.1 mRNA downstream 79012 874701 ~ 883480 (+) True rasgef1bb
XM_043250146.1 mRNA downstream 93013 888702 ~ 897888 (+) False antxr2b
XM_043250145.1 mRNA downstream 93014 888703 ~ 897888 (+) True antxr2b
TU108992 other upstream 99412 693200 ~ 695923 (+) True isl1b
TU108810 other upstream 396479 398268 ~ 398856 (+) False c10h5orf63
TU109131 other downstream 138380 934069 ~ 945853 (+) True rbm18
TU109829 other downstream 1315507 2111196 ~ 2111694 (+) True G74226
TU109752 other downstream 1398408 2194097 ~ 2200467 (+) True G74171
TU110053 other downstream 1793456 2589145 ~ 2705339 (+) False cntfr
TU110065 other downstream 1982170 2777859 ~ 2780475 (+) True il11ra

Expression Profile