RNA id: TU109004



Basic Information


Item Value
RNA id TU109004
length 263
lncRNA type sense_over
GC content 0.31
exon number 1
gene id fstb
representative False

Chromosome Information


Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 796011 ~ 801923 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GACTATAGCTTTTTAgagaaacatttaaacatttgatgTATTCTTTCTccgttttgtattatttatgtgtgtcctgTTCTCGTTTCTCACTGTATTAATAAACACGCACGTTTAGAATGAACAAAacacttattagcatgcatatattactagaatattagccatttaggAAAAAGTCGTAGTTAACGGTTTAAAAAGTGTTCCCAGTATTTTGTATTCGTGACAATACAAACAATGTATCGCCAAACAATAGTGTTTACGTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU109003 lncRNA upstream 457 795335 ~ 795689 (+) True G73656
TU108988 lncRNA upstream 21772 683167 ~ 774374 (+) False pmaip1
TU108885 lncRNA upstream 122837 653614 ~ 673309 (+) True G73588
TU108886 lncRNA upstream 143143 652544 ~ 653003 (+) True G73589
TU108837 lncRNA upstream 366876 428856 ~ 429270 (+) True G73560
TU109005 lncRNA downstream 83 796491 ~ 796939 (+) False fstb
TU109068 lncRNA downstream 8962 805370 ~ 805665 (+) True G73710
TU109069 lncRNA downstream 11210 807618 ~ 807846 (+) True G73711
TU109097 lncRNA downstream 58806 855214 ~ 855884 (+) True G73727
TU109101 lncRNA downstream 87845 884253 ~ 884487 (+) True G73731
XM_043250171.1 mRNA upstream 5511 766692 ~ 790635 (+) True itga2.2
XM_043250172.1 mRNA upstream 5511 766692 ~ 790635 (+) False itga2.2
XM_043250173.1 mRNA upstream 5511 766694 ~ 790635 (+) False itga2.2
XM_043250175.1 mRNA upstream 30477 751480 ~ 765669 (+) False LOC122352656
XM_043250785.1 mRNA downstream 47747 844155 ~ 847891 (+) True snx18b
XM_043250147.1 mRNA downstream 78293 874701 ~ 883480 (+) True rasgef1bb
XM_043250146.1 mRNA downstream 92294 888702 ~ 897888 (+) False antxr2b
XM_043250145.1 mRNA downstream 92295 888703 ~ 897888 (+) True antxr2b
XM_043250143.1 mRNA downstream 92296 888704 ~ 897888 (+) False antxr2b
TU108992 other upstream 100223 693200 ~ 695923 (+) True isl1b
TU108810 other upstream 397290 398268 ~ 398856 (+) False c10h5orf63
TU109131 other downstream 137661 934069 ~ 945853 (+) True rbm18
TU109829 other downstream 1314788 2111196 ~ 2111694 (+) True G74226
TU109752 other downstream 1397689 2194097 ~ 2200467 (+) True G74171
TU110053 other downstream 1792737 2589145 ~ 2705339 (+) False cntfr
TU110065 other downstream 1981451 2777859 ~ 2780475 (+) True il11ra