RNA id: TU109011


Basic Information

Item Value
RNA id TU109011
length 1777
RNA type TUCP
GC content 0.48
exon number 3
gene id G73662
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 693448 ~ 766346 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cacacacacacagacacacacacacacacacacacacacacactcactcacacacacacacacacacacacaggttcaGAAACCATTTAGAGGTACATATGATGAGgaataaaatactaaatcagTTCATTCtagcagaaaaacacagattctAGTAATATATACTATCTATCAAAAGTATTGGAATTactagatttgtttatttttttaattttttttcttcaaagtcacattaaatgcatttatgatgtttattagaatgatttctgaagagtaAAAGCTAAAAAGTTACATCCTAAAATAGAGATCTGCTATTTAAAGTGGACTAATATTCCCAGTATCCTCAGATCAGCCGCTGCGGGAGACGTCTGCCAGCGAGCCGCTCAGGTCGTCTTAGTCACCGGCTTCTGGTGGGATCTTTCTGCAGAATGAAGTGGGTTCCTTCGGTCCGTCAGCGTCCAGAAACCTCCGGAGAACAAGAGAAGAGCTTTGGTTTTCAGTGCAGAAAGAAATAAAGGTCACGTTCAGGGAATCATTATGTCGCCGTTAATAAACTGATTTCTCAGGAACAGAACGATGATTATTTGAAACCAGAATCTGTTGAGACGCCATGCATGAATTCACAAATTGATCAATCAGTcgattttacaaataattcatattatctaacaataaatgactaaatgaatatttaatagctcatataatttaaaataaattttaaattgcaatagtATTTCACTGTACTTTACTGTATTTCAAACCAAATCTTGACGAGGCTTCCTTCAAGAACATAAACACTCTACCCAGTCTCCTAACAGTGATCATATcatcagactgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtctgtgtgagtgtgtgagtgtgcgcgGCTCAGGTCAGTGTTCCTGTGTGAGAGGAAGCATCTGTGAGCCGAGAGCAGCTTCGTCTGATTCACGCAGAAAACATGTGGCACTTGTTCTCAAAAAACACGCTTCTAGTCGTCATTGAATCTGTCTGGAAGTCTACGGGCCGCTGAAAGCCTTTTCTgctaaccctaaacctgcccTAACACCTACCCTTAGTGACATGTAGTTACCCGAATGTCTAAAGCGGACCCTTCTTCTGCACTTTGATCAACTTTAAGTATTGTCGTGGCCTGCATCAGCTCACGCTCCGCTGAGAAAGGCACGCATGCATCTAAGACGTTGCCATGGCGACCGAATCGCTGGCTCTCACCGGACAGCCTTCAGCACGCGCTCCTCATCATCAGAGCTCTCTTCTTATCCTTGCACCTCTTGTTCTGGAACCAGACGCGGATGACCCTCGGGCTGAGGCCGGTCATCTGGGCCAGGGTCTCCTTCTCGAGGGCGTCCGGCCGGGGGTTAGCGCTGTAACAGGTCTGGAGCGCGCGGAGCTGAGCCTCGCCGAGCACCGTCCGGACGCGAGCCGACCTCCCCGCTGGCACGCACACCGAGAGAGAGCATCAAACAACACGCCTGTAAGAGAGCGGCGGACCTGAAGGTGCGTCCCCTCACCGGACGGAGCGTGGTCGGGACAGAGCGGCCGAGCGTCCCGCAGGACGTACTGATCCCCGGGGAGCAGGGGCCGACCGCAGGCCTCGCAGTGGAAACACCGCACGTGAAACACAGCCGGCCCCGTCCTCATCACGTGCTCCTCACCGCTCAAGGATTTGTGGCATCTAGCACACTCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108981 lncRNA downstream 24724 668335 ~ 668724 (-) True G73643
TU108945 lncRNA downstream 57720 627778 ~ 635728 (-) False G73624
TU108950 lncRNA downstream 57720 627778 ~ 635728 (-) False G73624
TU108946 lncRNA downstream 59497 630333 ~ 633951 (-) True G73624
TU108941 lncRNA downstream 114302 578060 ~ 579146 (-) True G73623
TU109040 lncRNA upstream 46950 742728 ~ 743650 (-) True G73684
TU109010 lncRNA upstream 68105 763883 ~ 765652 (-) True G73661
TU109062 lncRNA upstream 100182 795960 ~ 796182 (-) True G73704
TU109067 lncRNA upstream 108964 804742 ~ 804954 (-) True G73709
TU109201 lncRNA upstream 177286 873064 ~ 873900 (-) True G73799
XM_043250755.1 mRNA downstream 3320 685911 ~ 690128 (-) True golph3b
XM_043250892.1 mRNA downstream 71299 617030 ~ 622149 (-) False tctn1
XM_043250891.1 mRNA downstream 71306 617030 ~ 622142 (-) True tctn1
XM_043250740.1 mRNA downstream 82185 579303 ~ 611263 (-) True csgalnact1a
XM_043250742.1 mRNA downstream 82187 579303 ~ 611261 (-) False csgalnact1a
XM_043250177.1 mRNA upstream 94494 790272 ~ 792344 (-) True LOC122352658
XM_043250178.1 mRNA upstream 96545 792323 ~ 793795 (-) True LOC122352659
XM_043250791.1 mRNA upstream 113274 809052 ~ 842981 (-) False arl15b
XM_043250788.1 mRNA upstream 113274 809052 ~ 842972 (-) False arl15b
XM_043250789.1 mRNA upstream 114805 810583 ~ 843011 (-) False arl15b
XR_006251919.1 other downstream 296829 363677 ~ 396619 (-) False megf10
TU108681 other downstream 602152 40690 ~ 91296 (-) False LOC122353100
TU109045 other upstream 93645 789423 ~ 793724 (-) True G73687
TU109044 other upstream 93915 789693 ~ 793724 (-) False G73687
TU109216 other upstream 189675 885453 ~ 887513 (-) False si:dkeyp-41f9.4
TU109586 other upstream 749545 1445323 ~ 1448886 (-) True G74058
TU109534 other upstream 770973 1466751 ~ 1473878 (-) False G74031

Expression Profile