RNA id: TU109106


Basic Information

Item Value
RNA id TU109106
length 539
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G73732
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 917796 ~ 919493 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctctctctctgtctctctctcacacacacacacacacacactctctctctctctccctctctctctctcacacacacacacacacacacacacaccaggacAACAAGTGAagcattttattcagtttacACGGCCAGATCTGATCATGTAGATGAAAATAATGACAGGCCGATGTCGTGAATGTGAAACAAATGTTGGCAGCGTGCAGCTCTGAGCTCTCCTTCTAAAGCGTTTACATTCAGCGCCGAGCCTTTTACATAAACACCCCGTCTGTGGCATCGCTTTGATTAGGAGGAGTACCCCAAATCTCATTAAAACTTCATTCGTCCTGCCTGTGTTTGTTTGGAGACGTGAACACAAGGAGCAGCAAGAACCACTGGCGTGCCACGCCAACATTTGTTTACGGAGGAGAAAAACAGGCAAACAGCGTCCAGAAGAGAGGGACTTCTGTTCCTGGTGAAGGTCACCCGAGGAGCTCCTTGCTTTTAGTGGCCAGCTGTTTGTCGATGTCTGTCACGTAACCGTCTGCCATTTGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109116 lncRNA upstream 11080 906316 ~ 907653 (+) True G73739
TU109101 lncRNA upstream 34246 884253 ~ 884487 (+) True G73731
TU109097 lncRNA upstream 62849 855214 ~ 855884 (+) True G73727
TU109069 lncRNA upstream 110887 807618 ~ 807846 (+) True G73711
TU109068 lncRNA upstream 113068 805370 ~ 805665 (+) True G73710
TU109162 lncRNA downstream 161552 1081045 ~ 1082023 (+) False LOC122352734
TU109164 lncRNA downstream 196640 1116133 ~ 1116389 (+) True G73763
TU109157 lncRNA downstream 197620 1117113 ~ 1122250 (+) False G73760
TU109160 lncRNA downstream 197620 1117113 ~ 1126466 (+) True G73760
TU109167 lncRNA downstream 220856 1140349 ~ 1140659 (+) True G73766
XM_043250148.1 mRNA upstream 16883 898230 ~ 901850 (+) True paqr3b
XM_043250149.1 mRNA upstream 16883 898241 ~ 901850 (+) False paqr3b
XM_043250150.1 mRNA upstream 17554 898230 ~ 901179 (+) False paqr3b
XM_043250145.1 mRNA upstream 20845 888703 ~ 897888 (+) True antxr2b
XM_043250268.1 mRNA downstream 14583 934076 ~ 945860 (+) False rbm18
XM_043250269.1 mRNA downstream 14585 934078 ~ 945860 (+) False rbm18
XM_043250265.1 mRNA downstream 26510 946003 ~ 958730 (+) True lhx6a
XM_043250266.1 mRNA downstream 26510 946003 ~ 958730 (+) False lhx6a
XM_043250262.1 mRNA downstream 26510 946003 ~ 958730 (+) False lhx6a
TU108992 other upstream 222810 693200 ~ 695923 (+) True isl1b
TU108810 other upstream 519877 398268 ~ 398856 (+) False c10h5orf63
TU109131 other downstream 14576 934069 ~ 945853 (+) True rbm18
TU109829 other downstream 1191703 2111196 ~ 2111694 (+) True G74226
TU109752 other downstream 1274604 2194097 ~ 2200467 (+) True G74171
TU110053 other downstream 1669652 2589145 ~ 2705339 (+) False cntfr
TU110065 other downstream 1858366 2777859 ~ 2780475 (+) True il11ra

Expression Profile