RNA id: XR_006251908.1


Basic Information

Item Value
RNA id XR_006251908.1
length 1203
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id LOC122352692
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 2194085 ~ 2197429 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGTCGCGCGAGGGCGGAGGACGCGAACGCTCGCGGAACCGTGTGATCGTTCTGAGGGTGTAACGACACCCGTATGTCAAATCCTACACTGATTTAAATGCCGCCAAACTGTTACTCCGGCGCTATCTTCACCTGGCCCTTATTTGTCCCGTGAGCTGAAAGTTCGCTCCTCCTTGACCACGCGTTACCTGACAGGAGTTGAGTTTCACCGAGTATTGTGGTGAAGGGAGTGTCTCTTTTCAGCTTGGGAACACCGCTTAATTCTTTCAGCCTCAATACGTTCATCTGTTCTAAAGCCATCTCTGTCAGTATCTTTTCCTCATTCGTACACAGAGCTCCAGCATGTCCGTTCCTGCCGGTGACGATGGCGGTGCATCTCGCCATCTGATTGCGTGCGTCGAAAAGATATGCAGATATGGAAGATGTGTGCTGATGGACGGGAAGCCCACCTGCGAGTGTCAGCTGGGCTACGTTGGAGAGTCCTGTAGCGAAACGGTAAATGACGCTCTGTCTGTACCTCTCACCCTCGGCGTCATTGCGTTCATCGTTGGCGTTATCATCATGTTCTTTGGCGTGGCTTTTATCCGGCAAAGGCTAAAGGCGAAGAAGAGACAAAAGGCAGCCGAGGAAGCCCTGTTGAGAAATGGAGCGCACCCTTAGCATGCTTTTAATGCAGCGTGCCATAAAATAGTACCGTCAACACTTTCCACCGTGACACTTAACTCACACTTCGCGTGATGTTAGGCTTCTTTATATATGTAGGACTGAACGCATTCGACGTTAACCGAAAGCTGTTGTTTATGAAATCCGTGAAGTCTGCAGCACGTCTGAATGATTGTAGAACATGGAGAGGAGATACGTGTAAATCACGTTAGACGAGCATGGACTGGTTCCTCAAACATGCCAGGTATTTCAGTGCTGCTTcttctgctgttatttttagctCGGTCCTGACTGGCGAGTTTCAATAACTGAAAGCCGAATAGTTTCACGGACTGATAAGACACAGACTGGTATCTTTTTCAAGCATTTATGGAAAACATGCGTGCCATTTTTTTTATGGGTTGGGttgagtttatttttgcttttgtagtTTCACGACAGCTTTGAATTCAACCTTTTTAGCTTTTTAGCCTTATTCAGCTGTTAACATGACTGTCTGTACAGTATTTTtcaataaagatattttttcatttgcttcTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109951 lncRNA downstream 784 2191090 ~ 2193301 (-) True G74306
TU109968 lncRNA downstream 3927 2187668 ~ 2190158 (-) True G74320
TU109967 lncRNA downstream 14652 2179206 ~ 2179433 (-) True G74319
TU109965 lncRNA downstream 19722 2171007 ~ 2174363 (-) True G74317
XR_006251907.1 lncRNA downstream 23857 2169482 ~ 2170228 (-) False LOC122352691
TU109989 lncRNA upstream 50719 2248148 ~ 2250881 (-) True G74324
TU110014 lncRNA upstream 151906 2349335 ~ 2349691 (-) True G74346
TU110013 lncRNA upstream 153032 2350461 ~ 2350666 (-) True G74345
TU110032 lncRNA upstream 255729 2453158 ~ 2454862 (-) True G74364
TU110035 lncRNA upstream 262383 2459812 ~ 2460152 (-) True G74367
XM_043250219.1 mRNA downstream 8042 2181795 ~ 2186043 (-) False parm1
XM_043250218.1 mRNA downstream 8042 2181795 ~ 2186043 (-) True parm1
XM_043250212.1 mRNA downstream 71212 2107110 ~ 2122873 (-) False sh3bp2
XM_043250223.1 mRNA upstream 1554 2198983 ~ 2228990 (-) True si:dkey-88l16.3
XM_043250121.1 mRNA upstream 154234 2351663 ~ 2360133 (-) False katnal2
XM_043250119.1 mRNA upstream 154234 2351663 ~ 2360133 (-) False katnal2
XM_043250120.1 mRNA upstream 154234 2351663 ~ 2359893 (-) True katnal2
XM_043250128.1 mRNA upstream 163339 2360768 ~ 2363564 (-) True sigmar1
TU109557 other downstream 706077 1484374 ~ 1488008 (-) False nrarpa
TU109558 other downstream 706170 1483399 ~ 1487915 (-) True nrarpa
TU109556 other downstream 706170 1484374 ~ 1487915 (-) False nrarpa
TU109534 other downstream 720207 1466751 ~ 1473878 (-) False G74031
TU110254 other upstream 1139959 3337388 ~ 3339929 (-) False LOC122353137
XR_006251926.1 other upstream 1404183 3601612 ~ 3607788 (-) False hnrnpd
XR_006251921.1 other upstream 1708185 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other upstream 1708185 3905614 ~ 3912742 (-) False LOC122352741
TU111527 other upstream 4341105 6538534 ~ 6540926 (-) False si:ch211-113d22.2

Expression Profile