RNA id: TU109989


Basic Information

Item Value
RNA id TU109989
length 2734
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G74324
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 2248148 ~ 2250881 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aactttttattagtGTATTTATGAAGTCTGCATATGCAACACGCCTGAAAAGCTTATCGCCTGAAGTTCACGTCCTACCAATACATCTCTCTAATGGTAAAACAAGCTCACCAACTGTTAAATGCTTTGcaaaacaggagaaaaaaaaaattacaggagaaaaaaaaataaaataaaaaaggtaaaataaaattatatatacacatttatatgcatatatgtctGGTCCACTTTCAGTTCTATTTGGTTTTCTTTCCACACCCAGTCAAAAATGGCAAACAGAATGTTCCCAGTGTCTCAACGGCCGCTCGTCGGCTTTAAAAACGGGCCACAACATCTTCGTCAGCTTTTTACTAGATGCACTTAAAGTACAATCGCAAGAGTAGTTAAGTTCAATGAAGGAAAATATGGAGACAGAGGTGGGAAAGAGGGGAATGGATATTTGTAACGCCTGGTCACTGCCACAACAAGTAAAGAATAACAGACAGCTATATCACAGTCATTAGTAAAAGTTGTACAACGAGCACGCACACTAAAGTTGCACAGTTCTCCCTGTAAAAGCAACcggtttcgtttttttattcttttaattttttttaattccccAATTGCAAACAAATAGAACACCGCCATGATTTCGGGTAGCCGTACTTGGAGGGGCGGCGGGTTATACAGCATCGTGTGATGAACATGGGAGGAAAGCAACTGAAAAGAAAATTCGAGTCGGATGTACTTCAGGGGGTTCGAGATCAGGGCGAAACGTTAACCGGGACAACACCTTGAATTAGAAAGcggagaaagaggagaaaagatATTTGCGTTTATAAAAGTTCATGCTAAATAACGTTTTTGTATGATAGGACATTTCGTTATGAAGCcatgttcctttaaaaagaGGGCatgatctaaaaaaatattcaattctAATAAAAAGGAAGAGAGCTTTAAagatcttaaatatatttatatataaaaatacatgaaaatacaaaaagtagCTAAAAGAAAGATAAAGGGAAAAAATCTTGTAATTGTGAAGGATAACCTAGTTTATTAACACTTAAAGCTTAAATActtggatttgttttttattcttttgtcatttttattttaaagatctggactgcacaAGGAGACGCTTTAATAACCTTCGAAAGTCCCTAAAAGAAGCCACTTTCTGAAGAAACCAGACTCCAAAACCACTCCACAGCTAACTAGTGAATATTTCACCCagtgaataaaaagttaattctgAGGGGCAGCGTAAGTTTCCAATTGAACGTGgggtctttttttgtttttttttttgcgttaaACATTCTATAAGTTTAAAGAAAAGAAGCATGACTTACAGCAGCATACCTCAAATCAAAGGCAACATTCTTATATAGTGGTTTGGGGaagaaatggtaaaaaaaataataataatataataataataataataaaaacaaaataaaagtcttttggcattactgaagaaaatcaaacACAATGATTAAGTCTTACCGTGTCAATCTACACAATAATAACgtgtataaaaacaaagaatgtGACTTTTTGCCAGAAAAAGTAACCTCCTTGAACAACCGGATTGGGATCGGCATCCAGGAAAATTAATCGCTAAAAGAGTATCAGAGTATTTACTTCATCAGGGGGGAAAAGCCTTGCTGCTACAAGTGTGTGAAGTTATTTACTGCCTTCTTGAACTTCCACACAACATACGCACCTTCCCTCCTTCTcgaaaaccataaaaataaaataaaaaaacccaatatacatttcaaattctactactaatacatttaatattgagggtttatgaaagaaaacaagagagaaTTAAAGGTGCATGAAGCTGATGAGACAGCAAGTGCTGCGTTCAGGTCCGAACGGAGAGAACATCAGTGTCGGGAGGAGAGAAGAAGATAGAGAAAGGCTCACGATTActatgaaagagaaagaggggcGGGGGTTCGAGTAAGTCTGTTGTTCTTCGAGTTGTCGCTTGATGTGATTGTAGAATCAGTCGTTTGGGGGAGGGGGGGGACAGAGAGCTTGGTCGTGGCGATTAGGACATACTGGAACAGCGTACGGAGGGCGAGCCCATCTGGGTCAGGACCTTGTCCAGCCACTGCAGGGGGCCGTTCAGGTGAAGCTCGATCCAGCAGGGGGTGCTCGTCACCGTCTGCCGTCTACACAACAAATCAACGGATTTCAATACAACCGATTTCGACGGCAACAACACAGTCATGTTCAAGTTACTGCGGCGACGGCTTGAATACTGCTTTTGGAACGTGAGAAACAGCGCGTGATTTAATTCGTACTACGGCGAAGGTTtgactcatgaatattaatcagccTCCGAAAGTTGCATAGCAACAACTTCATTGGTGTTCATGAGCTATGTCTTTGCCTGACAGGACCAGTAGTATTTTGTACTAtcaatactgtatatataaataaaaaaaaaaaagctgctgcTACTACTACATAATTAGCACATGCCAAGTACGGAGTAAGTATCTAGTTTTAGATTTTTGACTAGCTCTGTCACAGCATGAAAATTTATGACGGAGTTAATTAAAAGTGGATATCAatagcagaacaaaaaaaaaaaatatataaatctcatttctgcaataaaaaaataaattaaaaaaaactcaaaagggATACAAGAGACGTTTAATTTGTGGCAAAACGGTCACAGCAAAGAAAATGGTAAATAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251908.1 lncRNA downstream 50719 2194085 ~ 2197429 (-) True LOC122352692
TU109951 lncRNA downstream 54847 2191090 ~ 2193301 (-) True G74306
TU109968 lncRNA downstream 57990 2187668 ~ 2190158 (-) True G74320
TU109967 lncRNA downstream 68715 2179206 ~ 2179433 (-) True G74319
TU109965 lncRNA downstream 73785 2171007 ~ 2174363 (-) True G74317
TU110014 lncRNA upstream 98454 2349335 ~ 2349691 (-) True G74346
TU110013 lncRNA upstream 99580 2350461 ~ 2350666 (-) True G74345
TU110032 lncRNA upstream 202277 2453158 ~ 2454862 (-) True G74364
TU110035 lncRNA upstream 208931 2459812 ~ 2460152 (-) True G74367
TU110123 lncRNA upstream 466216 2717097 ~ 2717337 (-) False LOC122352587
XM_043250223.1 mRNA downstream 19158 2198983 ~ 2228990 (-) True si:dkey-88l16.3
XM_043250219.1 mRNA downstream 62105 2181795 ~ 2186043 (-) False parm1
XM_043250218.1 mRNA downstream 62105 2181795 ~ 2186043 (-) True parm1
XM_043250212.1 mRNA downstream 125275 2107110 ~ 2122873 (-) False sh3bp2
XM_043250121.1 mRNA upstream 100782 2351663 ~ 2360133 (-) False katnal2
XM_043250119.1 mRNA upstream 100782 2351663 ~ 2360133 (-) False katnal2
XM_043250120.1 mRNA upstream 100782 2351663 ~ 2359893 (-) True katnal2
XM_043250128.1 mRNA upstream 109887 2360768 ~ 2363564 (-) True sigmar1
XM_043250042.1 mRNA upstream 466401 2717282 ~ 2767195 (-) True LOC122352587
TU109952 other downstream 50837 2194115 ~ 2197311 (-) False LOC122352692
TU109557 other downstream 760140 1484374 ~ 1488008 (-) False nrarpa
TU109558 other downstream 760233 1483399 ~ 1487915 (-) True nrarpa
TU109556 other downstream 760233 1484374 ~ 1487915 (-) False nrarpa
TU109534 other downstream 774270 1466751 ~ 1473878 (-) False G74031
TU110254 other upstream 1086507 3337388 ~ 3339929 (-) False LOC122353137
XR_006251926.1 other upstream 1350731 3601612 ~ 3607788 (-) False hnrnpd
XR_006251921.1 other upstream 1654733 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other upstream 1654733 3905614 ~ 3912742 (-) False LOC122352741
TU111527 other upstream 4287653 6538534 ~ 6540926 (-) False si:ch211-113d22.2

Expression Profile