RNA id: XM_043250483.1


Basic Information

Item Value
RNA id XM_043250483.1
length 1894
RNA type mRNA
GC content 0.36
exon number 3
gene id si:ch73-234b20.5
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 3596606 ~ 3604216 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAGGGGAAGCTCTGTTTGCAAATGAGTTCTCTAATGTTTCATCCTGTTCGTTGTTCGCACTTGCGTTGTGGCTCACAGGAATGAGCTTCCCTAAAAAATCCTGTCCTTGAGGCAGTGGTCGCAGTCtgactttaacaaaaaaaaaaaacgtctggCAGCTACAGTTGGGCGTTTGAGGAGGTTTCAGTGAAGTTTCAGAATGGCTGACTACAACACCGAACCACAAGCGCCCAGCAAACTCAATCAAGTTCAGGATCAAGTCAATGATGTTAAAGTCATTCTCAAAGACAACATCAACAAAGTCCTAGAGAGAGGAGAGCGGTTAGACGACCTGATCGGCAAGACAGATGATCTGCAGGCCACGGCTGACTCGTTTCAAAGGACATCCACACGTGTTGCCAGAAAGATGTGGTGGAGAAATACCAAGATGATGATTATAATTGGTGTGGTAGTGCTCGCCATCATCATTTTAATCATCCTGTTAGCAACAAACGTCATTCCCACCTAATACAACCCAGACATCCATTTCAGTcatttgtatacacacacacacacacacacacacacaaagaattACTTTTTTACTCTAAAAGAAACTGGATTCATTTATGTATAGGTAAATTActatttttgacatttcatgTAAAATTCTATATAAATCCGGGGGTGAATATGTATGGGGTGTACgcatatgaattatgaatttttaCTTGTCAGAGTTTACTTGTTATCTTTATATAATGGGACTGAAAACAAGGGAAAGATGCTTTTATTGTTAGTAGCCTTCCTTTGAAAGgatatcattcattcattccaaaAACCATTTCAGCTACAATTACATTTCATGACAAACCTGCATACCTCCAATGAACCTTCATCACGTTATGACAGTGACTGATTCCTGAAACATTTCTCATGTTTTACCTAATGTGCTCAGGAAACTGATTTTATACACTGAGCGTCTTCTGGGCTGGGTTGAATTTCGAGTATGTTTcattgtatatttacatttcaattcaAACCCTTCAGTAAGTAATCTGTCTTTGTCAAGAGGACGTATGGCCTGTACAGATAATACGTTCTATATAGGAAATACTGATTAGCATGTACttattgtgtaaaaataagtacataaaatgaatttaaaggaacagttcacccaaaagtgaattACTTTCCTAATGGAAATGACGGAAGAGAACTCCAGTGTCAGTAAATGAAAGATAATCCAGACTATCTCACTCCAAAATGAGCACCATTTCCTTATTACTCATGACGAAATTATGTATTTACTTCAATATCACAATtacaaatattgtatttaacaCTTGATTTTTAagcagaaagactgaaatagaattttactgtaaaaggtAATCCAatgtttaaattacaaaatatattggtAACACCGGTAGTCTTTATGaataatacaatacatattttcataaaCAATCACGTTACACTTTTTGAAGGTGCGACTATAAATAGGTATCACTATGGTTATTACAATTGCTCGCGAGATcatacaatgcattataaattgtGTTTGAAAAGCAGTTTATTTCCCTTACAATGCAAAGCTTTATTAGTGATTATATTCGTTTTGTTATTCTAACGGCGGGCGTATTTTATAGCTGGTGTAATCTTGACAACGGCAGCAATATTTGACATCAAGCAGAGTAAAAGACGACGAAAGTCttcgtttttgggtgagctatgaCTTTAATCTCTGCAGAAACAACAGGCGGAAAGATtcatacactttattttgtactttccAATGGTTTACATGACTCTGTAGCAAAATACTGCaatatgaaatgaatattaaacgACCTACGCCATGTACGCACTTGTAAGCAATAAATTAATAGGCCTGTATAcaaataa

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110209 lncRNA upstream 6545 3588455 ~ 3590061 (+) True lyrm7
XR_006251963.1 lncRNA upstream 8712 3587363 ~ 3587894 (+) True LOC122353153
TU110060 lncRNA upstream 815289 2780642 ~ 2781317 (+) True G74392
TU110061 lncRNA upstream 815332 2780642 ~ 2781274 (+) False G74392
TU110057 lncRNA upstream 879849 2716522 ~ 2716757 (+) True G74389
TU110243 lncRNA downstream 78670 3680422 ~ 3691410 (+) False cdc42se2
TU110371 lncRNA downstream 166449 3768201 ~ 3768652 (+) True G74585
TU110376 lncRNA downstream 187005 3788757 ~ 3844512 (+) True G74589
TU110384 lncRNA downstream 252564 3854316 ~ 3858952 (+) True G74596
TU110427 lncRNA downstream 290139 3891891 ~ 3893020 (+) True G74626
XM_043249840.1 mRNA upstream 6495 3588418 ~ 3590111 (+) False lyrm7
XM_043250574.1 mRNA upstream 22254 3569302 ~ 3574352 (+) False LOC122352855
XM_043250573.1 mRNA upstream 22254 3569323 ~ 3574352 (+) True LOC122352855
XM_043250031.1 mRNA upstream 28109 3496746 ~ 3568497 (+) True LOC122352579
XM_043249998.1 mRNA upstream 140819 3413925 ~ 3455787 (+) True LOC122352557
XM_043250479.1 mRNA downstream 7275 3609027 ~ 3617516 (+) False enoph1
XM_043250478.1 mRNA downstream 11437 3613189 ~ 3617516 (+) False enoph1
XM_043250818.1 mRNA downstream 25415 3627167 ~ 3637308 (+) False carm1l
XM_043250821.1 mRNA downstream 25415 3627167 ~ 3637308 (+) False carm1l
XM_043250817.1 mRNA downstream 25416 3627168 ~ 3640861 (+) True carm1l
XR_006251933.1 other upstream 24486 3569278 ~ 3572120 (+) False LOC122352855
TU110065 other upstream 816131 2777859 ~ 2780475 (+) True il11ra
TU110053 other upstream 891267 2589145 ~ 2705339 (+) False cntfr
TU109752 other upstream 1396139 2194097 ~ 2200467 (+) True G74171
TU109829 other upstream 1484912 2111196 ~ 2111694 (+) True G74226
TU110245 other downstream 62192 3663944 ~ 3667908 (+) False zgc:113274
TU110241 other downstream 67271 3669023 ~ 3694596 (+) True cdc42se2
TU110456 other downstream 411308 4013060 ~ 4042694 (+) False LOC122352388
TU110458 other downstream 441835 4043587 ~ 4046954 (+) False LOC122352388
TU110470 other downstream 473586 4075338 ~ 4120447 (+) False LOC122352388

Expression Profile