RNA id: TU110243


Basic Information

Item Value
RNA id TU110243
length 608
lncRNA type sense_over
GC content 0.56
exon number 4
gene id cdc42se2
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 3669003 ~ 3694596 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGGCGGGGCTTCGTCTCAGGAGCGTGCATGAGCCCTGGCCGGTCAGTGATGCAGTGAATGAATGCCACTCGCCCGCTGATCCGTAACTGAGTGCGGGACAAAGGCCTCCTGGAGAGCTCACAGCTCCTCGGCCTGGGATAAACCCTGAAGCTCCTCGCCTCTCCTCTCACTTCATCACTGCGGCTGGTCGAGATGGTCTGAGCGTTTGCTAAGTGGACTGAGCCGTAAACGGGCTTCCCGTCTGGATCTCTGCCATCGCTCTCTTCCTGCTTTCCTTTCCCCGGATCCTCAGGCCGCAGAAATCCACCATCATACCCGATTGGACCTTTGAATCGTGAAACTTGTGCCCCGTACATAAGCACCAGAGCCCCTCAGGGCCCGCGGACACAGCGGCACTTTAGCGCCGTGTGCTAGTCATGAGTGAATTCTGGTTGTGCTTCAACTGCTGTATCGCCGAACAGCCGCAGCCGAAGAGGCGGAGACGTATAGATCGGAGTATGATCGGCGAGCCGACTAATTTTGTCCACACGGCCCATGTAGGCTCTGGAGATCTCTTCAGTGGCATGAACTCTGTGAACTCAATTCAGAACCAAATGCAGTCTAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110213 lncRNA upstream 69768 3588244 ~ 3610654 (+) True enoph1
TU110212 lncRNA upstream 76206 3596612 ~ 3604216 (+) True si:ch73-234b20.5
TU110209 lncRNA upstream 90361 3588455 ~ 3590061 (+) True lyrm7
XR_006251963.1 lncRNA upstream 92528 3587363 ~ 3587894 (+) True LOC122353153
TU110060 lncRNA upstream 899105 2780642 ~ 2781317 (+) True G74392
TU110371 lncRNA downstream 76791 3768201 ~ 3768652 (+) True G74585
TU110376 lncRNA downstream 97347 3788757 ~ 3844512 (+) True G74589
TU110384 lncRNA downstream 162906 3854316 ~ 3858952 (+) True G74596
TU110427 lncRNA downstream 200481 3891891 ~ 3893020 (+) True G74626
TU110489 lncRNA downstream 429454 4120864 ~ 4122658 (+) True G74667
XM_043250030.1 mRNA upstream 12416 3663912 ~ 3668006 (+) True zgc:113274
XM_043250817.1 mRNA upstream 39561 3627168 ~ 3640861 (+) True carm1l
XM_043250819.1 mRNA upstream 39561 3627168 ~ 3640861 (+) False carm1l
XM_043250820.1 mRNA upstream 39561 3627168 ~ 3640861 (+) False carm1l
XM_043250818.1 mRNA upstream 43114 3627167 ~ 3637308 (+) False carm1l
XM_043251083.1 mRNA downstream 6131 3697541 ~ 3708314 (+) True sptlc1
XM_043250336.1 mRNA downstream 18256 3709666 ~ 3767673 (+) True ror2
XM_043250337.1 mRNA downstream 77344 3768754 ~ 3772710 (+) True nfil3
XM_043251077.1 mRNA downstream 82100 3773510 ~ 3790180 (+) True auh
XM_043250033.1 mRNA downstream 116604 3808014 ~ 3818485 (+) True ankrd55
TU110245 other upstream 12514 3663944 ~ 3667908 (+) False zgc:113274
XR_006251933.1 other upstream 108302 3569278 ~ 3572120 (+) False LOC122352855
TU110065 other upstream 899947 2777859 ~ 2780475 (+) True il11ra
TU110053 other upstream 975083 2589145 ~ 2705339 (+) False cntfr
TU109752 other upstream 1479955 2194097 ~ 2200467 (+) True G74171
TU110456 other downstream 321650 4013060 ~ 4042694 (+) False LOC122352388
TU110458 other downstream 352177 4043587 ~ 4046954 (+) False LOC122352388
TU110470 other downstream 383928 4075338 ~ 4120447 (+) False LOC122352388
TU110461 other downstream 805164 4496574 ~ 4500100 (+) False LOC122352783
TU110851 other downstream 1426441 5117851 ~ 5120654 (+) False LOC122352404

Expression Profile