RNA id: XM_043251049.1


Basic Information

Item Value
RNA id XM_043251049.1
length 1511
RNA type mRNA
GC content 0.54
exon number 10
gene id LOC122353137
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 3337339 ~ 3377784 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGGACCCCAGAGCTGAGCAAACAAGCGAGACGGACGCTTCGACTGTCAGCCATCTGAGGAATGCGGAGGCTCGCGTATCAGCACAGTGATCCTGCAGAACCTAGAGAAGCTAGACAGAGCGGAAGCTGCAAGCTGTAGCATCCAGCATTAATCTGATATCTCAGGAAAAGGTGGAGGAGAGCCGTCAGTCTCAAGGTGATGCTGGTAACAGCGGCGCAGAGCAGACGAGGAAAACCAGAGAACGAGGAAGAGGGAGAAGACGCAGCCATGATGGGCACACCTCTACGGAGGAAAGCCCCGGCATATGAGATGGCTGAAGCTGAACTTCACAAGGAAAGGCTCCAAGCCCTGGCGGAAAAACGGAAAAGACAAGCCGAGATAGAGGACAAAAGGCGACAACTCGATGAACTTGTTCTACAACTTCAACATTTTaagTCCAAAGCCATGAGGGAGAGGTGGCTTCTCCAGGGGACACCAGCGGTGCcacaagaggaagaagaaggcCGGAGAAAACAGGTTGAGCAAGACGAACATCACGCTAAGACACTAGAAGATGCTATTCATAGATTGGAATCAGAAATCAGTCTTTTGGAGAATGAAGAATCACAGATATCAGCTAAAGAACAAGTTCTCAGAGAGCGATCATGGGAAACAGAGAGATCTATTGAAGATCTCCAGAAGAGTCTTCAGAATCAAGATGGAGATGCGGTGAATTACAACTGCTCCCAGATCCCGGACCTCCCAGAACTGAACTCCCAAACTCCCGTCTCAGCTTCAGGGGATCAGCAACCGCCAAGAAAATCTGCATTATACGCCATGGAGATCAGCGTCGAGAAGGACCGGAAAACGGGTGAAAGCAAGATCCTCTCGGCCTCTGCGGTCAGCCCACGTGACGCTCACCAGAGGGGCGTCAAAGTCTACGACGACGGCCGCAAAGTGATCTACGAGGTGCGTTCTGGGGGATCTACAACACTGGAGAATGGCACGCACCCCTGGAGCCCCGGCGAGGTGGACGAGCTCATGCAACAAGTGGGCCAGTCCCAGCAACGAAGCGACGGAGCCCGGGTCACCGTCACACCCGCTGAGCCCCAGACAACTACAGGACAGGTCAGCTCCAAGCAAGACCACAAACAATCCCCGAGGAAAGGCTACCAAGGTGAGGTCACGGAGACTCCACAGGCCTCTGCCGACAAACCGGTGACCATGATCTTCATGGGCTACCACAGCGTCGAGGACGAGGAGGAATCCAAGAAGCTGCTTGGCTTCGACGGCACCATCAAGGCTGAGATCGTCCTAATCGATGAGGACGATGAGAAATCTCTTCGGGAGAAGACCGTCACTGATATCTCCACCATCGATGGAAACGCCGCTGACCTTGTGTCGGGCCGGCCTCTGTCCGATACCACCGAACTGTCCTCAGAAGGCAAAGATGAAAGCTCGACCAAGGAACTGCCACCCACAGGTATTGAAAAAAAACGCTGCCAGTGCTGTGCTGTCATGTGACCTTTCT

Function

GO: NA

KEGG:

id description
K16519 AKAP2; A-kinase anchor protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110147 lncRNA downstream 287821 3049232 ~ 3049518 (-) True G74459
TU110143 lncRNA downstream 447391 2889445 ~ 2889948 (-) True G74455
TU110119 lncRNA downstream 555823 2780642 ~ 2781516 (-) True G74436
TU110118 lncRNA downstream 556043 2780642 ~ 2781296 (-) False G74436
TU110123 lncRNA downstream 620002 2717097 ~ 2717337 (-) False LOC122352587
TU110268 lncRNA upstream 72753 3450537 ~ 3454994 (-) True G74537
TU110304 lncRNA upstream 209651 3587435 ~ 3587894 (-) True G74551
TU110345 lncRNA upstream 321821 3699605 ~ 3700769 (-) True G74574
TU110414 lncRNA upstream 402275 3780059 ~ 3834370 (-) True G74614
TU110406 lncRNA upstream 443607 3821391 ~ 3824596 (-) True G74609
XM_043249800.1 mRNA downstream 76724 3259677 ~ 3260615 (-) True LOC122352385
XM_043249935.1 mRNA downstream 120528 3167723 ~ 3216811 (-) True plppr1
XM_043250723.1 mRNA downstream 372906 2898351 ~ 2964433 (-) False LOC122352946
XM_043250722.1 mRNA downstream 372907 2898351 ~ 2964432 (-) False LOC122352946
XM_043250721.1 mRNA downstream 372907 2898351 ~ 2964432 (-) True LOC122352946
XM_043250572.1 mRNA upstream 196512 3574296 ~ 3586506 (-) False snx30
XM_043250571.1 mRNA upstream 196512 3574296 ~ 3586506 (-) True snx30
XM_043249838.1 mRNA upstream 212483 3590267 ~ 3594819 (-) True mat2al
XM_043249839.1 mRNA upstream 213766 3591550 ~ 3594821 (-) False mat2al
XM_043250473.1 mRNA upstream 223828 3601612 ~ 3607788 (-) False hnrnpd
TU109952 other downstream 1140028 2194115 ~ 2197311 (-) False LOC122352692
TU109557 other downstream 1849331 1484374 ~ 1488008 (-) False nrarpa
TU109558 other downstream 1849424 1483399 ~ 1487915 (-) True nrarpa
TU109556 other downstream 1849424 1484374 ~ 1487915 (-) False nrarpa
TU109541 other downstream 1863461 1466751 ~ 1473878 (-) False G74031
XR_006251926.1 other upstream 223828 3601612 ~ 3607788 (-) False hnrnpd
XR_006251921.1 other upstream 527830 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other upstream 527830 3905614 ~ 3912742 (-) False LOC122352741
TU111527 other upstream 3160750 6538534 ~ 6540926 (-) False si:ch211-113d22.2
TU111553 other upstream 3250641 6628425 ~ 6631157 (-) False sprn2

Expression Profile