RNA id: TU110268


Basic Information

Item Value
RNA id TU110268
length 1877
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G74537
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 3450537 ~ 3454994 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cttgttttggttttaggacaactttgatgaaaggttttgatccacttcaaatgttgaccgCTGTATATTttgtgcgtgagagtgtgtgtgtgcatgtatgtgtgtatttgtgtaaagCTGTGAAACTCACCAGAAATAGAGCTATTGAGCTTCCTAATATGAACCCAGCGATGACGTCTGAGCAGTGATTGCGGTATTCTGATACACGGTTCAATCCAGTCAGGAAAGCAGCGCACAGGATTCCCAGACAAAGTACAGGCTTGGCCAGACGACTGCTTTTCGTCTTGATGGTGCTCGTGATGTACATCTGAAACAGCCAAgcgcgtacacacacacacacacacacacacacacacacacacacaagctcaggAAACCATTTATTCAGTGGATTTATTGTGTAGCAGGTGACTGAGGAAATCaagcttaaataaatacacGCCGCTTGCTCCACCTCAGGGAAATTATGGCCAATTATGGAGAATGGAATCGGAGTAAATAACCTCTTATTcccaggaaagagagagaaagagagctgaTCTAAACTCACCTCAACCAAAGAAAAGACTTCAACGTTCAACATCACTAACCTGACATCAAACACACTGAAGATCTATTCAAAACCAGTGTCTGTCAAAATCTCAGAATTTTGTCCATTAAcaacaaatacaatatattgtatttatacattttttttttttttttttgcctttttgccCTAAAAGATTTAATTGAATACTGCTGTCGGATACatgaaaaacatcaaacaattatttattaaaaatgctaataatatttaacttcTTTAATGGGTATTTGATAGCATATTAGTTTGATTTTGGTATCTAAATTGAGATGAACAccttttaaaactaaattaaacgaATATTCGTAACAACTTTGCATAAAAACTAACTTTTACAACCTATATATCTGATATAACTAGATTCACAATGTCATAGAAAGAACATGTTTGTCTAAATTGTTCccgtaaagaacctttaacatcagaaaaacctttttgtttcaaaaaggttctttgtgtggacaaaggttctttatattattaaaaaagtaagaaaaagaTTTGTAGAAGGACCTTTTAAagatatagttcacccaaataggaaaattctgtcatcgtttactcaccctcaagtaatTCCAAACCTGAATTAATTTCTTGAAGTATATgggagtgagtaaatgattacagatttttcagttttaggtCAACTATTCATAAtaagcatctttatttttaagagtgtataaAAGTCGCTAAATTGAAACAGCAGGCCATTTTTCATGCATCCTTACTTTGTCCAAGCGGAACATGGACATGATTTCAGACCAATTATATCATTTCAAGATTAATTGCTGTAGACATGGTTGGGACAACTTTTGCGTAAAGCTAATATCTTTTCTAGATAAATAAAGCAATCAATTTAGAACTCAACACGAAACCATTTCAGACCCACGCTACAGTGCCTTACAGTAACGTAGACGGCGGAGTAGACACTGAGCGAAGCGTCTTTGGATGGGAAGGACCTCCTGGCTCTCTCCACCACCACCTGGTTCCCGGTGCAGATGTTTCCATTGGCGATGAACTGGTGGTTGAAGTGACAATCCATCCCGGTGTAATTTGGCTTGCAGACGCTCAGGAAATACGGCGCCAAATTGCCCGTCGCTACCTGGCCGGAGTTGACAAAGATGTCGGTGGCGAACAGGCCAAACGCGAAGACACCAAACCTAATGATTCTGCGGATGAGAGGGTTTAGGTAGCAGCACTCGCCCGTCACAATGGTTTTCTCCTGGGCTAGGAGAGCTTCTCTAGTGGACTTCATGATATACATGGAGATCTCACCGACAAATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110147 lncRNA downstream 401019 3049232 ~ 3049518 (-) True G74459
TU110143 lncRNA downstream 560589 2889445 ~ 2889948 (-) True G74455
TU110119 lncRNA downstream 669021 2780642 ~ 2781516 (-) True G74436
TU110118 lncRNA downstream 669241 2780642 ~ 2781296 (-) False G74436
TU110123 lncRNA downstream 733200 2717097 ~ 2717337 (-) False LOC122352587
TU110304 lncRNA upstream 132441 3587435 ~ 3587894 (-) True G74551
TU110345 lncRNA upstream 244611 3699605 ~ 3700769 (-) True G74574
TU110414 lncRNA upstream 325065 3780059 ~ 3834370 (-) True G74614
TU110406 lncRNA upstream 366397 3821391 ~ 3824596 (-) True G74609
TU110425 lncRNA upstream 372131 3827125 ~ 3828028 (-) True G74624
XM_043251049.1 mRNA downstream 72753 3337339 ~ 3377784 (-) True LOC122353137
XM_043249800.1 mRNA downstream 189922 3259677 ~ 3260615 (-) True LOC122352385
XM_043249935.1 mRNA downstream 233726 3167723 ~ 3216811 (-) True plppr1
XM_043250723.1 mRNA downstream 486104 2898351 ~ 2964433 (-) False LOC122352946
XM_043250572.1 mRNA upstream 119302 3574296 ~ 3586506 (-) False snx30
XM_043250571.1 mRNA upstream 119302 3574296 ~ 3586506 (-) True snx30
XM_043249838.1 mRNA upstream 135273 3590267 ~ 3594819 (-) True mat2al
XM_043249839.1 mRNA upstream 136556 3591550 ~ 3594821 (-) False mat2al
XM_043250473.1 mRNA upstream 146618 3601612 ~ 3607788 (-) False hnrnpd
TU110254 other downstream 110608 3337388 ~ 3339929 (-) False LOC122353137
TU109952 other downstream 1253226 2194115 ~ 2197311 (-) False LOC122352692
TU109557 other downstream 1962529 1484374 ~ 1488008 (-) False nrarpa
TU109558 other downstream 1962622 1483399 ~ 1487915 (-) True nrarpa
TU109556 other downstream 1962622 1484374 ~ 1487915 (-) False nrarpa
XR_006251926.1 other upstream 146618 3601612 ~ 3607788 (-) False hnrnpd
XR_006251921.1 other upstream 450620 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other upstream 450620 3905614 ~ 3912742 (-) False LOC122352741
TU111527 other upstream 3083540 6538534 ~ 6540926 (-) False si:ch211-113d22.2
TU111553 other upstream 3173431 6628425 ~ 6631157 (-) False sprn2

Expression Profile