RNA id: TU110414


Basic Information

Item Value
RNA id TU110414
length 1600
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G74614
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 3780059 ~ 3834370 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aacatttgactaaagtatttatttgaccTATGGTATCAGTGATACACACCTAAGTCATACAAGGATCACACagataaatgaatacatgtcATAAGGCATACaatgaaacatttgcatttcataattGTCATTTCAATGTAGTGTTAGTTTTATCCCAAGAGAAAATGATCACCAGGAACATGAAAGCTAAAGGTTAACTCAAGCTAAGGTTGACATTCTGTtgcatattgttaaaaatatgaatattctgAATACCATAAGTAGTAATATGTGTCAACGCCATAATGCACCTTGGcacaaattatgaataatttttaaacaatactaTGCTGGAAGCAAGAAATCAGCAACAGGTACACTACCAGTAAAATGTTTCGAAACAGTAAGATATTATGATATGTTTTTCTCTTCTACttaccaagcctgcatttattggatccaaagtacagcaaacagtaaaaatgtgaaatatttttactatttaaaataagtgctttttatttgaatatattttaaaatgtaatttattcccatCATTTCAAAGCTAAATACATTACTACGgtcagaaatcattttgatttgctgatcaatataaatgcataacagcatttatctgaagtagaaatctttataaatgttttaaatattgacaataataattattaatgtttcttgTGCAGCAAGTCGTCATATTTCAATCATATatcaatgatttctgaaggatcgtgggaataaataacacttttaacggaaagcagttattttaaacagtaaaaagtgcttttgctgtactttggatcaaataaatacagcggAGGAAATCTTCCCGTTCAAAAATGTTGACCGGCAGTCTAAATGAGAATGGAAATCCACGTCTTTACACAACGCTACAAGGAAACATGCATGTGATTCAAGACAACAGACAGAAGCAGTCGTTCTCCCTCTGAAGGCACGTGGCAGTGTGAGCAGTCTAGTGTTACCATACACACTCGGCGTAAGCTTGCATAAAATGGCAAATCAAAAGTTGGTAACAGGCACATTCAGATACAGTCTCTAAAGCGCCCGTGTCTTTTACTGAGGTCGGTAGCCGTTCTGCTGCGGCATGTAACATAAAGCAGAGGGGGGCGGATCCTCTGCACTGGGAGACGCCTCCTCCTCCTGCACCGGACAGAAGCTCAGGGAGCCTCCGTCACATTCGGGAGCCGCGACGCCGGGCTCCAGCTCTCGGCCGCGTCTGAAGTACGAGCTCCTGGAGTGGCTCTCACTGAGCTGGTCCGGATGCTCCTCGCAGTCCAACAACGGCTGTGTGGACTCGGAGCGAGCGAACGCCGGAGGCTGGTGGCTGGGAGTCTGCCCCTTGTAGCCGCTGGCCAGCACCGAGGAGTACTGCACCGTGCTGGCTGTGGTCTGACCCGAGTCACCTTCGTCGCTGTCTGACACGCTGTGCCGGGGCGAAGACATGCAGGACGAGCCTCCGATGCCGCTGCTGTGCTCCTCTGAGAGATACTTGTCCTTCTTCAGCGGCAGCACGCCTTTGTCTTCCTCGCACAAGGACTTGCCGTCGAACACGTCCACCTCCATCACGCTGACGTGTGGTTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110345 lncRNA downstream 79290 3699605 ~ 3700769 (-) True G74574
TU110304 lncRNA downstream 192165 3587435 ~ 3587894 (-) True G74551
TU110262 lncRNA downstream 246343 3309787 ~ 3533716 (-) True G74533
TU110268 lncRNA downstream 325065 3450537 ~ 3454994 (-) True G74537
TU110147 lncRNA downstream 730541 3049232 ~ 3049518 (-) True G74459
TU110585 lncRNA upstream 157817 3992187 ~ 3993434 (-) True G74739
TU110588 lncRNA upstream 163531 3997901 ~ 3999787 (-) True G74742
TU110583 lncRNA upstream 172860 4007230 ~ 4009374 (-) True G74737
TU110643 lncRNA upstream 247206 4081576 ~ 4530616 (-) False G74769
TU110644 lncRNA upstream 247206 4081576 ~ 4532236 (-) False G74769
XM_043250282.1 mRNA downstream 116178 3644069 ~ 3663881 (-) True sec31a
XM_043250481.1 mRNA downstream 154276 3617515 ~ 3625783 (-) False tmem150c
XM_043250482.1 mRNA downstream 154276 3617515 ~ 3625783 (-) False tmem150c
XM_043250480.1 mRNA downstream 154276 3617515 ~ 3625783 (-) True tmem150c
XM_043250475.1 mRNA downstream 167776 3607967 ~ 3612283 (-) True hnrnpdl
XM_043250199.1 mRNA upstream 9322 3843692 ~ 3879520 (-) True pam
XM_043250200.1 mRNA upstream 9322 3843692 ~ 3876554 (-) False pam
XM_043250198.1 mRNA upstream 9322 3843692 ~ 3876554 (-) False pam
XM_043250920.1 mRNA upstream 57272 3891642 ~ 3904123 (-) True pdzph1
XM_043250328.1 mRNA upstream 71244 3905614 ~ 3912742 (-) True LOC122352741
XR_006251926.1 other downstream 172271 3601612 ~ 3607788 (-) False hnrnpd
TU110254 other downstream 440130 3337388 ~ 3339929 (-) False LOC122353137
TU109952 other downstream 1582748 2194115 ~ 2197311 (-) False LOC122352692
TU109557 other downstream 2292051 1484374 ~ 1488008 (-) False nrarpa
TU109556 other downstream 2292144 1484374 ~ 1487915 (-) False nrarpa
XR_006251921.1 other upstream 71244 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other upstream 71244 3905614 ~ 3912742 (-) False LOC122352741
TU111527 other upstream 2704164 6538534 ~ 6540926 (-) False si:ch211-113d22.2
TU111553 other upstream 2794055 6628425 ~ 6631157 (-) False sprn2
TU111552 other upstream 2794060 6628430 ~ 6631157 (-) False sprn2

Expression Profile