RNA id: TU110456


Basic Information

Item Value
RNA id TU110456
length 1970
RNA type TUCP
GC content 0.50
exon number 16
gene id LOC122352388
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 4013034 ~ 4120447 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTCAAAGCAACGGTGCAGAAATCACTTCTGTTCTGACATTACATACCAGCATTTACTCAACACAAACTTTCTGCTGGGGGACAGGGATTGCTAACGTATTGGTTATTGTCCGAAGGAGGACAGCTAGCGATCGAAGAAAGCTGAGGAGTAGCAGTGGCACAGTCCCGTAGTGTCAGTCATGGTGGCGCTGTCGCTGAAGATCGGGGTGGGGAATGTGGTGAAGACCATGCAGTTCGAGCCCTCCACCATGGTGTACGACGCCTGTCGCATCATCAGGGAGAGAGTTCCAGAAGCACAGCTCGGCCAGCCCAGTGACTATGGCCTCTTCCTGTCAGATGAGGACCCAAAGAAAGGTATTTGGCTAGAAGCAGGCAAAGCCCTGGACTACTACATGCTaagaaatgggGACACTCTGGAGtacaaaaagaaacagagacCCCTGAAGATCCGCATGTTGGATGGAACTGTTAAAACAGTCATGGTGGATGACTCAAAAATCGTCAGTGACATGCTAATGACCATCTGTGCCAGAATAGgcatcACAAACTATGACGAGTACTCACTGGTGCGTGACGTGGGAGAGGAAAAGAAGGAAGAGACCACAGGGACACTGAAAAGAGACAAGACCCTCCTGAGGGATGACAAAAAAATGGAGAAGCTCAAACAGAAACTTCACACAGATGATGAGCTGAATTGGTTGGATCATGGGCGGACTCTGCGAGAGCAGGGTGTAGAGGAGTCTGAGATGCTGCTTCTCAGAAGAAAGTTCTTCTACTCGGACCAGAATGTAGATTCCAGGGACCCGGTACAGCTCAACTTGCTCTATGTGCAGGCCCGTGATGACATCCTGAATGGCTCCCACCCCGTCTCTTTCGATAAGGCATGCGAGTTTGCTGGATACCAGTGCCAGATCCAGTTTGGAGACCACAATGAGTCAAAACACAAACCTGGATTTCTAGATTTGAAAGAATTCCTGCCCAAAGAGTACATCAAGAACAAGGGCGAAAAAGATCTTCCAGGCACACAAAAACTGCCAAAACATGACCGAGATTGAGGCCAAAGTCAGCTACGTCAAACTGGCCAGATCTCTAAAAACCTATGGAGTGTCCTTCTTCTTAGTCAAGgaaaaaatgaaaggaaagaaTAAGCTTGTTCCACGTTTGTTGGGCATCACTAAAGAGAGCGTAATGAGAGTGGACGAGAAGACCAAAGAAGTGATGCAGGAATGGAGTCTGACCAACATCAAACGCTGGGCGGCTTCTCCCAAAAGCTTCACCCTGGACTTTGGAGACTATCAGGATGGTTACTACTCTGTTCAGACCACTGAAGGAGAGCAGATTGCACAACTCATCGCTGGTTACATCGACATCATTCTCAAAAAGaaaaagagcaaagatCACTTCGGCCTGGAAGGCGATGAGGAGTCAACTATGCTGGAAGACTCGGTATCTCCCAAAAAGTCAACAGTTCTTCAGCAGCAGTTTAATAAAGTTGTGAAAGTGGAAACGGGCTCCGTTGCTCTGCCGGCCATCATCCGCTCTGGTGCAGGTGGTCCAGAGAGCTTTCAAATGGGCTCCATGCCACAGGCCAAACAGCACATCACCAGTGGGCAGATGCACAGAGGACACATGCCGCCTCTGACCTCAGCTCAGCAGGCTTTGACCGGCACCATTAACTCCAGTATGCAGGCGGTACAAGCAGTTCAGGCCTCTCTTGATGAGTTTGACGCCCTGCCTCCACTGGGCACTGATGCGGCCTCTCAAGCATGGAGGAAGAACAAAATGGATGAGTCCAAACATGAGATTCATTCTCAGGTGGACGCCATAACTGCGGGAACTGCCTCTATGGTCAATCTGACTGCAGGAGACCCAGCAGAGACGGATTACACCGCTGTGGGCTGTGCAGTCACCACCATCTCCTCCAACCTGACCGAGATGTCTAAAGGTGTGAAACTGTTGGCAGCGCTgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110427 lncRNA upstream 120040 3891891 ~ 3893020 (+) True G74626
TU110384 lncRNA upstream 154108 3854316 ~ 3858952 (+) True G74596
TU110376 lncRNA upstream 168548 3788757 ~ 3844512 (+) True G74589
TU110371 lncRNA upstream 244408 3768201 ~ 3768652 (+) True G74585
TU110243 lncRNA upstream 321650 3680422 ~ 3691410 (+) False cdc42se2
TU110489 lncRNA downstream 78170 4120864 ~ 4122658 (+) True G74667
TU110507 lncRNA downstream 108764 4151458 ~ 4153279 (+) True G74680
TU110508 lncRNA downstream 112353 4155047 ~ 4160317 (+) True G74681
TU110481 lncRNA downstream 122264 4164958 ~ 4176118 (+) True G74659
TU110513 lncRNA downstream 154838 4197532 ~ 4201390 (+) True G74686
XM_043250611.1 mRNA upstream 3690 4001799 ~ 4009370 (+) False hmgcs1
XM_043250610.1 mRNA upstream 3690 4002642 ~ 4009370 (+) True hmgcs1
XM_043250536.1 mRNA upstream 13122 3960041 ~ 3999938 (+) True map3k1
XM_043250324.1 mRNA upstream 77223 3912265 ~ 3935837 (+) True syk
XM_043250323.1 mRNA upstream 77223 3912265 ~ 3935837 (+) False syk
XM_043250421.1 mRNA downstream 38889 4081583 ~ 4096903 (+) True tpm2
XM_043250420.1 mRNA downstream 38891 4081585 ~ 4093040 (+) False tpm2
XM_043250419.1 mRNA downstream 38892 4081586 ~ 4096903 (+) False tpm2
XM_043250418.1 mRNA downstream 38894 4081588 ~ 4093040 (+) False tpm2
XM_043250426.1 mRNA downstream 43042 4085736 ~ 4096903 (+) False tpm2
TU110241 other upstream 318464 3669023 ~ 3694596 (+) True cdc42se2
TU110245 other upstream 345152 3663944 ~ 3667908 (+) False zgc:113274
XR_006251933.1 other upstream 440940 3569278 ~ 3572120 (+) False LOC122352855
TU110065 other upstream 1232585 2777859 ~ 2780475 (+) True il11ra
TU110053 other upstream 1307721 2589145 ~ 2705339 (+) False cntfr
TU110458 other downstream 893 4043587 ~ 4046954 (+) False LOC122352388
TU110470 other downstream 32644 4075338 ~ 4120447 (+) False LOC122352388
TU110461 other downstream 453880 4496574 ~ 4500100 (+) False LOC122352783
TU110851 other downstream 1075157 5117851 ~ 5120654 (+) False LOC122352404
TU110913 other downstream 1078795 5121489 ~ 5123272 (+) False LOC122352404

Expression Profile