RNA id: TU110458


Basic Information

Item Value
RNA id TU110458
length 464
RNA type TUCP
GC content 0.58
exon number 3
gene id LOC122352388
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 4013034 ~ 4120447 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCCACGACAGAACCTCCTGCAAGCAGCGGGTAATGTGGGTCAGGCCAGTGGTGAACTCCTGCAGCAGATCGGAGAGTCTGATGCTGATCAGCACTTCCAGGACATGTTGATGCAGTTGGCAAAGGCTGTGGCTAATGCAGCGGCGGCTCTGGTGTTAAAAGCCAAGAATGTGGCTCAGAAAACAGAAGATTCAGCTCAACAGAACCGAGTGATTGCCGCTGCCACCCAGTGTGCCCTGTCCACGTCACAGCTTGTGGCCTGCACCCGAGTGGTGGCTCCCACCATCAGTTCCCCTGTGTGTCAGGAGCAGCTCATCGAGGCCGGGAAGCTGGTGGCTAAGTCTGTGGAGGGTTGCGTGGAGGCGTCACAGGGCGCGACCAATGACGAGCAGCTGCTCAAACAGGTGGGTGTGGCCGCCACAGGTGTCACTCAGGCTCTCAACGAGCTGCTGCAGCATATCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110427 lncRNA upstream 150567 3891891 ~ 3893020 (+) True G74626
TU110384 lncRNA upstream 184635 3854316 ~ 3858952 (+) True G74596
TU110376 lncRNA upstream 199075 3788757 ~ 3844512 (+) True G74589
TU110371 lncRNA upstream 274935 3768201 ~ 3768652 (+) True G74585
TU110243 lncRNA upstream 352177 3680422 ~ 3691410 (+) False cdc42se2
TU110489 lncRNA downstream 73910 4120864 ~ 4122658 (+) True G74667
TU110507 lncRNA downstream 104504 4151458 ~ 4153279 (+) True G74680
TU110508 lncRNA downstream 108093 4155047 ~ 4160317 (+) True G74681
TU110481 lncRNA downstream 118004 4164958 ~ 4176118 (+) True G74659
TU110513 lncRNA downstream 150578 4197532 ~ 4201390 (+) True G74686
XM_043250611.1 mRNA upstream 34217 4001799 ~ 4009370 (+) False hmgcs1
XM_043250610.1 mRNA upstream 34217 4002642 ~ 4009370 (+) True hmgcs1
XM_043250536.1 mRNA upstream 43649 3960041 ~ 3999938 (+) True map3k1
XM_043250322.1 mRNA upstream 107750 3916603 ~ 3935837 (+) False syk
XM_043250421.1 mRNA downstream 34629 4081583 ~ 4096903 (+) True tpm2
XM_043250420.1 mRNA downstream 34631 4081585 ~ 4093040 (+) False tpm2
XM_043250419.1 mRNA downstream 34632 4081586 ~ 4096903 (+) False tpm2
XM_043250418.1 mRNA downstream 34634 4081588 ~ 4093040 (+) False tpm2
XM_043250426.1 mRNA downstream 38782 4085736 ~ 4096903 (+) False tpm2
TU110456 other upstream 893 4013060 ~ 4042694 (+) False LOC122352388
TU110241 other upstream 348991 3669023 ~ 3694596 (+) True cdc42se2
TU110245 other upstream 375679 3663944 ~ 3667908 (+) False zgc:113274
XR_006251933.1 other upstream 471467 3569278 ~ 3572120 (+) False LOC122352855
TU110065 other upstream 1263112 2777859 ~ 2780475 (+) True il11ra
TU110470 other downstream 28384 4075338 ~ 4120447 (+) False LOC122352388
TU110461 other downstream 449620 4496574 ~ 4500100 (+) False LOC122352783
TU110851 other downstream 1070897 5117851 ~ 5120654 (+) False LOC122352404
TU110913 other downstream 1074535 5121489 ~ 5123272 (+) False LOC122352404
TU110926 other downstream 1191474 5238428 ~ 5250137 (+) False LOC122352567

Expression Profile