RNA id: TU110470


Basic Information

Item Value
RNA id TU110470
length 1828
RNA type TUCP
GC content 0.41
exon number 5
gene id LOC122352388
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 4013034 ~ 4120447 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGATACATGAAGTAATTTTTGATGAGGGTCACGCCAGCGAGGAGAAACTCATTTCTTGGCCAAACAGGTGGCAGCATCCACCGCTCAACTGCTGGTGGCCTGTAAGGTCAAGGCTGACCAGGACTCCCAGACCATGAAGAGACTGCAggcTGCAGGTAATGCCGTCAAGAGGGCGTCAGATAACCTGGTGAAGGCGGCGCAGAAGGCTGCGTTCGAGGCCCAAGATGATCAGGCCGTGATGGTGAAGAGCAAGATGGTAGGCGGTATCGCTCAGATCATCGCCGCTCAGGAAGAGATGCTCAGGAAGgagagagagctggaggaagcCAGGAAGAAGCTGGCCATGATACGACAGCAACAGTACAAGTTCCTGCCGTCAGAGCTCAGAGAGGACGGACAGGAACAGTGAGCCGCGCCAGAGACTAATCAGTGACATTGAGAGCTCGAGAAAAGTCATCAACGATATGCAATGAGTAAAAAGTGAACTATGTATCAGGATGtctattttaagtgttttgtttatttccgTCACTTTTTTGGAGAATTGCCATGCCAGCTTTATTGTTTAGTTGTATTTGGATAAAGCATATACAAATCCTTTTTAATgtctatattatttttcttcagtaCTAGATAGGTCAGATCAgcagtgtgtgttttgaaagctCGTGATCGTGGCAGGGGCCAAACAGTGTTTGTAAGCTTTTCAAGAcaaaatttgtactttttcaattttttttttttttttttttttttGCTCATTAAGAAAGTGTCTTTATTTAccaaaaatgagaaagaaaaaaaaaacaatacaaaccGTGGATAATGTGGCCGAGCAAATCATGTTGCATAATTGTACATCATCTTACCACAGATATCAGTGCCATTTCAcagagaaaatattaatatagtagAGGGTGTGGAAAACCTGGGAACCATGTGAAGcatgataaaaatatcaatgaacagaaaacaaacagcttGACCAAACAactgaagacatttttcttattgGAAACACGGACGAAATGTCATTTATCAAACTGCACATCCTCCACCTCAACGTCATACTAAATAGACATTTGGTGATGTCTAGGACTTGATAATCTATTTAGTGCTTCAATGggttttcctgtttttatgcCCACCCTGTCTGTACTGTATTAGTCACGTGACGCTCTGAAAGCATGCTTTTTGAGCAGCATCTTATATTTGCTTTACGTTTAACACCAAAAACAGGaaacaacaaacacagatgACTTCAGCCACAGAAATTACGCATACAGCTGGACCgattattattgtaattcaCAATGAAATAAGAAAAGTACAACACACACTCCAGGGGCTCAGAACCAAGCTATCGTTAAGCGTGTTACGGACAAACCCaggaaaagttatttttgtaacaaGTTGACCAAGAAACACTTCTCTTTAGTGATTATGCACTCATGATTGGGCACAAGTAGCATAAATATAAAGTCTAAAAAGAACTCGAGCTAACAGCATTCCAGATCCTGATTAATAGGAACTGACGTGAGTGTGTGAAAAAAggaatttttgtaatttgtctGTCATCTTGGTCCAACACCGAATGCATCTCGACTAACAAGTTTACAGCGCAGAAGATCCACTTGTAGATCCAAAGGAAATTTGCTGTGTCGTATATCTTTTAAAAACCAGAGGCAGTGCAGCAGATATTTAGGACTCAAAGCAGGATTTCATGATTGCCTCTTTGTCAAATCTGAAGCTGAGAAAAGACCGTGAGGAGAGGATGTATTCCCCGTAACACAAGTCCGCCTGTCCGTTACAGCCATAGACTTCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110427 lncRNA upstream 182318 3891891 ~ 3893020 (+) True G74626
TU110384 lncRNA upstream 216386 3854316 ~ 3858952 (+) True G74596
TU110376 lncRNA upstream 230826 3788757 ~ 3844512 (+) True G74589
TU110371 lncRNA upstream 306686 3768201 ~ 3768652 (+) True G74585
TU110243 lncRNA upstream 383928 3680422 ~ 3691410 (+) False cdc42se2
TU110489 lncRNA downstream 417 4120864 ~ 4122658 (+) True G74667
TU110507 lncRNA downstream 31011 4151458 ~ 4153279 (+) True G74680
TU110508 lncRNA downstream 34600 4155047 ~ 4160317 (+) True G74681
TU110481 lncRNA downstream 44511 4164958 ~ 4176118 (+) True G74659
TU110513 lncRNA downstream 77085 4197532 ~ 4201390 (+) True G74686
XM_043250611.1 mRNA upstream 65968 4001799 ~ 4009370 (+) False hmgcs1
XM_043250610.1 mRNA upstream 65968 4002642 ~ 4009370 (+) True hmgcs1
XM_043250536.1 mRNA upstream 75400 3960041 ~ 3999938 (+) True map3k1
XM_043250322.1 mRNA upstream 139501 3916603 ~ 3935837 (+) False syk
XM_043250430.1 mRNA downstream 6446 4126893 ~ 4131432 (+) True reep5
XM_043250409.1 mRNA downstream 89192 4209639 ~ 4229765 (+) True ddx4
XM_043250410.1 mRNA downstream 89192 4209639 ~ 4229765 (+) False ddx4
XM_043250411.1 mRNA downstream 89192 4209639 ~ 4229765 (+) False ddx4
XM_043250412.1 mRNA downstream 111223 4231670 ~ 4241404 (+) True slc38a9
TU110458 other upstream 28384 4043587 ~ 4046954 (+) False LOC122352388
TU110456 other upstream 32644 4013060 ~ 4042694 (+) False LOC122352388
TU110241 other upstream 380742 3669023 ~ 3694596 (+) True cdc42se2
TU110245 other upstream 407430 3663944 ~ 3667908 (+) False zgc:113274
XR_006251933.1 other upstream 503218 3569278 ~ 3572120 (+) False LOC122352855
TU110461 other downstream 376127 4496574 ~ 4500100 (+) False LOC122352783
TU110851 other downstream 997404 5117851 ~ 5120654 (+) False LOC122352404
TU110913 other downstream 1001042 5121489 ~ 5123272 (+) False LOC122352404
TU110926 other downstream 1117981 5238428 ~ 5250137 (+) False LOC122352567
TU110925 other downstream 1124143 5244590 ~ 5250137 (+) True LOC122352567

Expression Profile