RNA id: XM_043249801.1


Basic Information

Item Value
RNA id XM_043249801.1
length 8713
RNA type mRNA
GC content 0.54
exon number 63
gene id LOC122352388
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 4013034 ~ 4120447 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTGCAGGGTGGAGTTTAACGTAGCGCCTCAAAGCAACGGTGCAGAAATCACTTCTGTTCTGACATTACATACCAGCATTTACTCAACACAAACTTTCTGCTGGGGGACAGGGATTGCTAACGTATTGGTTATTGTCCGAAGGAGGACAGCTAGCGATCGAAGAAAGCTGAGGAGTAGCAGTGGCACAGTCCCGTAGTGTCAGTCATGGTGGCGCTGTCGCTGAAGATCGGGGTGGGGAATGTGGTGAAGACCATGCAGTTCGAGCCCTCCACCATGGTGTACGACGCCTGTCGCATCATCAGGGAGAGAGTTCCAGAAGCACAGCTCGGCCAGCCCAGTGACTATGGCCTCTTCCTGTCAGATGAGGACCCAAAGAAAGGTATTTGGCTAGAAGCAGGCAAAGCCCTGGACTACTACATGCTaagaaatgggGACACTCTGGAGtacaaaaagaaacagagacCCCTGAAGATCCGCATGTTGGATGGAACTGTTAAAACAGTCATGGTGGATGACTCAAAAATCGTCAGTGACATGCTAATGACCATCTGTGCCAGAATAGgcatcACAAACTATGACGAGTACTCACTGGTGCGTGACGTGGGAGAGGAAAAGAAGGAAGAGACCACAGGGACACTGAAAAGAGACAAGACCCTCCTGAGGGATGACAAAAAAATGGAGAAGCTCAAACAGAAACTTCACACAGATGATGAGCTGAATTGGTTGGATCATGGGCGGACTCTGCGAGAGCAGGGTGTAGAGGAGTCTGAGATGCTGCTTCTCAGAAGAAAGTTCTTCTACTCGGACCAGAATGTAGATTCCAGGGACCCGGTACAGCTCAACTTGCTCTATGTGCAGGCCCGTGATGACATCCTGAATGGCTCCCACCCCGTCTCTTTCGATAAGGCATGCGAGTTTGCTGGATACCAGTGCCAGATCCAGTTTGGAGACCACAATGAGTCAAAACACAAACCTGGATTTCTAGATTTGAAAGAATTCCTGCCCAAAGAGTACATCAAGAACAAGGGGAAAAAGATCTTCCAGGCACACAAAAACTGCCAAAACATGACCGAGATTGAGGCCAAAGTCAGCTACGTCAAACTGGCCAGATCTCTAAAAACCTATGGAGTGTCCTTCTTCTTAGTCAAGgaaaaaatgaaaggaaagaaTAAGCTTGTTCCACGTTTGTTGGGCATCACTAAAGAGAGCGTAATGAGAGTGGACGAGAAGACCAAAGAAGTGATGCAGGAATGGAGTCTGACCAACATCAAACGCTGGGCGGCTTCTCCCAAAAGCTTCACCCTGGACTTTGGAGACTATCAGGATGGTTACTACTCTGTTCAGACCACTGAAGGAGAGCAGATTGCACAACTCATCGCTGGTTACATCGACATCATTCTCAAAAAGaaaaagagcaaagatCACTTCGGCCTGGAAGGCGATGAGGAGTCAACTATGCTGGAAGACTCGGTATCTCCCAAAAAGTCAACAGTTCTTCAGCAGCAGTTTAATAAAGTTGTGAAAGTGGAAACGGGCTCCGTTGCTCTGCCGGCCATCATCCGCTCTGGTGCAGGTGGTCCAGAGAGCTTTCAAATGGGCTCCATGCCACAGGCCAAACAGCACATCACCAGTGGGCAGATGCACAGAGGACACATGCCGCCTCTGACCTCAGCTCAGCAGGCTTTGACCGGCACCATTAACTCCAGTATGCAGGCGGTACAAGCAGTTCAGGCCTCTCTTGATGAGTTTGACGCCCTGCCTCCACTGGGCACTGATGCGGCCTCTCAAGCATGGAGGAAGAACAAAATGGATGAGTCCAAACATGAGATTCATTCTCAGGTGGACGCCATAACTGCGGGAACTGCCTCTATGGTCAATCTGACTGCAGGAGACCCAGCAGAGACGGATTACACCGCTGTGGGCTGTGCAGTCACCACCATCTCCTCCAACCTGACCGAGATGTCTAAAGGTGTGAAACTGTTGGCAGCGCTgatggaggacgaggaggaaaTGGCCAGCAGTTTGGGTGCTGCCAAGAACCTGGCGTGCGCTGTGTCCGATATGCTCAAGACCGCTCAGCCCTCTAATACTGAGCCACGACAGAACCTCCTGCAAGCAGCGGGTAATGTGGGTCAGGCCAGTGGTGAACTCCTGCAGCAGATCGGAGAGTCTGATGCTGATCAGCACTTCCAGGACATGTTGATGCAGTTGGCAAAGGCTGTGGCTAATGCAGCGGCGGCTCTGGTGTTAAAAGCCAAGAATGTGGCTCAGAAAACAGAAGATTCAGCTCAACAGAACCGAGTGATTGCCGCTGCCACCCAGTGTGCCCTGTCCACGTCACAGCTTGTGGCCTGCACCCGAGTGGTGGCTCCCACCATCAGTTCCCCTGTGTGTCAGGAGCAGCTCATCGAGGCCGGGAAGCTGGTGGCTAAGTCTGTGGAGGGTTGCGTGGAGGCGTCACAGGGCGCGACCAATGACGAGCAGCTGCTCAAACAGGTGGGTGTGGCCGCCACAGGTGTCACTCAGGCTCTCAACGAGCTGCTGCAGCATATCAGACAATACGCCAGCGGAGGACAGCCAATCGGACGGCGCGGAGAGGCCACTGACCGCATCCTGGATGTGACCGATAACATCTTCAGCTCCATGGGAGACGCAGGGGAGATGGTGCGACAGGCTCGGATCCTTGCTCAGGCCACCTCAGATTTAGTCAATGCCATCAAAGCCATTGCGGAGGGTGAAACCGACCTGGAGAACTCCCGCAAACTTCTGTCTGCTGCCAAACTCCTGGCTGATGCCACCGCCAAGATGGTAGAAGCTGCGAAGGGTGCGGCTGCTAACCCTGACAGTGAGGAGCAGCAGCAGAAGCTGCGTGAAGCTGCGGAGGGTCTGCGCATGGCCACCAATGCTGCTGCACAGAAGCGCCATTAAAAGAGGCTGGTCAACAAACTGGAGAATGCAGCCAAACAGGCGGCTGCAGCTGCCACTCAGACGATTGCTGCCGCGCGCGAATGCGCCTCTTCCAACAAGAACCCTGCTGCCCAGCAGCAACTCGTGCAGAGCTGCAAGGTGGTGGCAGATCAGATCCCTCAGCTAGTTCAGGGTGTGAGAGGAAGTCAAGCTCAGCCTGACAGCCCCAGCGCCCAGCTCGCCCTGATTGGAGCCAGTCAGAACTTCCTCCAGCCCGGAGCGAAAATGGTGACTGCAGCAAAAGCCACGGTTCCCACCATCAGTGACCAGGCATCTGCCATGCAGCTCAGTCAGTGCTCCAAAAAACCTGGCTAGCGCTCTGCTGAGCTGCGCACCACGCGCAAAAAGGCTCAGGAAGCATGTGGTCCTCTGGAGATTGATAATGCTCTCACAATGGTACGGGCTGAGAGGGACATGCAGGAGGCCAAAGCTTCAGCTGCTGAAGGCAAACTCAGACCCCTGCCTGGAGAAACGctggaGAAGTGTTCTCAGGATCTGGGCTCTAGCACTAAAGCCGTGAGCTCTGCTATCGCTCAGCTTCTCAGTGAAGCCACCCAAGGCAATGAGAACTACACAGGTATGGCTGCTCGTGATGTAGCCCAGGCTCTCGTTCACTGGCCGGCTGCACGTGGAGTGGCCGCCAACACGGAGGACCCTCATGCCCGTAATGCCATGCTGGACTGCACCGCAGATGTCATGGACAAATCAGCCAGCCTGATCGAGAGACCAAGAGCCATCGCCAAACCGGGAGACCCTGACAGCCAACAGAGACTGGCCCAGGTAGCTAAGGCAGTGTCTCAGGCTCTGAACCGCTCCGTAAACTGTCTGCCGGGGCAGAGAGACGTGGATAATGCCATCAGAACTGTAGGAGAAGCCAGCAAGAAACTCCTGTCTGATAAAGTGATGGGAAAGAGTTTCCAGGAGGCTCAGGCGAATCTGAACGAGGCAGCAGCTGGACTGAACCAGTCAGCCAATGAGCTGGTGCAGGCGTCAATGGCACCACCAGGACCTGGCAAAGCCTCCGGGAAGTTCGGACAAGACTTCAATCACTTCCTGCAGGCTGGAGTGGACATGGCTGGACAATCCCAGTCTAAAGAGGACCAGACTCAAGTGGTTACCAACCTTAAGACCATCTCCATGTCCTCCAGCAAACTTCTGCTGGCTGCTAAAGCTCTGTCCACAGACCCCAACTCACCCAACCTGAAGAACCAGCTAGCTGCTGCCGCTCGGTTAGAATCAGATATCTTCTGCTGTTCAATTCATGTTTTGTCATCAATGGTGACAGACAGCATTAATCAGCTGATCAGCATGTGTACCCAGCAGGTCTCCGGGACAAAGGAGGTGACAACGCTCTCCGCGGTTGGGGAATGCTGGAGAATCCCACAGGAAGCGGTCAATGATTTGGGCTACTTTGACTGCATTGACAGTGTGATGGAGAACTCAAAGGTTTTGGGTGAGGCTATGGCTGGCATTTCCCATAATGCCAAGAACAGTAACTTGCCAGAATTTGGAGACTCAGGTGTGTCTGACCCGGCCAGTCACGGCTGGCAAGTAAAGTGGCTTATGGACTCTCTCATGAACAAGCGTCAGGCTCTCGATGGGCCTTTAACCAGGAGAACAGACAAAGTGTGTAAGGAAGCCACTGGGCCGCTCACATCCGAGGGAGCTGTGGATAACCTGACCGCCTTCGTAAACCCAGAGTTTGCTAAGCCGCGTGTCCGAAGATCTGAACAGCCAGCAGCAGATGGCGTCCTGGATCAAACTAAGATAAGCGGGGTCTGCCCTACAGATACTCTACACTGCAAAGAGGCTGGAGGAAACCACCGAAAGGCGGCGGCCAGTGCTGCAGGAGGCGGTGGGCGGCATGGTCAACTCCATCACTCAGCCATCAATAAGATGGAAGGCGGTCCTGGAATGGAACGCAGAGCGTTTGTGGATTATCAGACCACGATGGTGAAAGCGGCCAGCTATCGCTGTCACCCGTTCAGAGATGGTAAAAACCGTGCTGGAACAATCGGTTCTCACATCAGGAAGCAGGTGACAGAGCTGGGCTACAGCTGCACTGGTCTGGTCAGTAAGCAGGGAGCACTGCAGTGCAGTCCAGCGACTCCACCACCCAAAAAGGAGCTCCTTCGACAGTGCTCGGAGAGTCTCGGGTGTCTCACGTGCTGCCGCGGCGGCTCTTCAGAGCGGGCAATGCGTGATGCTCAGGCTTACCATTACGCTGCCAGTGCTGTTTCTGGCATCATTGCGATCTGGACACCACCATCATGTTTACCACCGCGTGCTCTCAACCCGAAGCGCGAGACCTTTGCAATACAGGGGCTTAGTCAGGAGAAACTGGCTCAGAGCTGCACAGTCGTCTATTTAACCTACATCACTAAACTGGCTGATGTGGATTTCAAGCGCAGTGTTTCACATCAAGTGGAAGTCCTGGGCTGCGAGGAACCAGCAGGTCACCTGGCATTGAGTGTCCTTGGCGGGACATCCATTGAAGGGGTGCATGGTCGGTCAACAGGGAGTGAACCGCCCATTGCCGAAGGTAATGCGCTGACTCAGGGCTGCCCACCTGATggccagggcctccttctccacctgCGTGGTTCCTCTCGGCTGGGTTCCAGCTTCACTGCTGATGAAGAGTGCGGGATGCTCCTCCTGCCTGGACCTGGGACAAGGACAGCTCCCAGACCCGTGCGGAAGCACATCCGTTTGCAGGAGGAGAGCAGCGAGAAGTCCGAGCCCGGGGGCTCCAGGGTGTATCCTCTCGGGCTGCCCCTTCCTGAAGTCACGGAGTCTGTCAGAGGCGACTATAGAGGAGAAGTTGAGGATAAAACGCCAGTGATATCGGCCAACCCCAGAAAGCGCGTGCCTGGGACTAGCAGCGCCAGCGTTCATGTCACGACGACGAGGCTTTCGGTGGCATGGAGTTCTCCGCAGTACCATTTCTTAAAGCAAATTGACGCCGTAGATCTGCTCAGGTCCGGCGTCGGTGGGTTGCCTGACTTTATAGTTGCAGATGTTAGCCGTTCCAGTACGGTGCTCCCGGGTCCCTGCCGTGGCCCAGAAACTTACAGGCCTGGTGGGGACCAGAACCGCGACTTGATAGCCGACGATTCGCGGCTGGCGGGCGGTTGTAGTGGCGTTGCTACAGGCTCTGGGCCTCCGTCATGTGTTCCCGTGCTGGGGGCATCACCGTTCGATCCGGTCCGCGCCTGGCCTGGGCGTGTTCGGCGACCTGCGACCTCTGGGTcgcggctgctgctgctgttcccaGGCCTCTGTGTCCCGCCAATGGATGGGCGTGGGCCAGTTCTGTCTCGTATCCACAGCGGCTTTCCAGGATACACCAACAGAAAAACACCTCACTCGCGAGCGGCGACCAAACGTTACGATGTGAAGTCACCCGGGAGAGGGATGGGGCTGGGCGGACTTCCTCCTAGGAAGCGCGCCAATCCCAGCAGTGTTTTGTATCATCGTCCCGTTGAGCTTGACCGAATGGGCCTCAGTTATCGACAGAGCGTTTGGGGCGTGGGCAGGAGGCCTTGGCGGGCTGGATGCCAGGCGGCAGCACGCTGCAGAGTCCAGGGCGGCGTTAACTTGCGCCCGTTTGGCGATGGGGGCGGCAGCGCCTGTGAGCTTTACTCTGGTGTAACCCACAGCCCTTCGCCAGCCTGGGTTCCCAGAGGCTGGGGTGGTAGAAGCTTCCGTGGGCATGGGTTCGTCCCCTTTACTGCAGGCCGCGCCCGCTCTGCACTGGCAGCAGGTACCCTCCGGCCTTGCTGCTCTGGGGTGCCCTCCAGGAAAAGGTGGCTTCGCTCCAGCTCCCTGCGATTAACTGCCAGCTCGGCCGCTACTAACTCCGAGGGCGTCGGGGATTGCATGCGACCTGCGCCTGGCGGTAGGATCGAAGAAACCGCGAGAGCGGTCGATGACCACCCTCTCAAGCGATCTGGCGGGGTGGGTCTGATCAGTAATGTTGGGGCTAAACGGGTGAGCTGGCGACTTGAGCCGGGCGGTGAGGCGTCGGGTGAGCAGCCAGTCGAGAACCCCTGGGCTGCGCAGATCGGAGGTCGAGCCGACCCTTCGAGGATCTCCGTTTCAGAGTGCGTCATAGTTATGCAGCCAGGTCAGCGGCAGCATAGAAGCTGCTGCGCTTCTCCAGTTAACTTAAGCCAGGGTGTGCGTGCCCACTGCCGGCGAATCCCATCCTTCCGTGTGGCGACATTCACCGGGTATCACCAAAAATCTGGGTGCGTCATGGCTGAGTGTTTCCAGGAAGGTGATGTGTTCAGCAGTCCAGATCCTCTCCTCCCAAAGGCCGCCACTCCAGAGGAGTTCATCCATGACAGCCAAAGGCATCACGTTCAGCGGCATTCCGGTGACCGAGATCTTCGAGCTCAGGCACTGCGTGGCTCTGAGTGCCAGGATACACAGCTGCTGCAGACATCTGCTGAAGTGATCATTCAGAAACCAAGTCATGACCTTAAGCAGCAGCTGGCAAACTTCTCCAAGCGCGTGGCCGGTTCAGTGACAGAGCTCATACAGGCTGCAGAGGCCATGAAAAGCTCAGGACCCGACCGTCATACGCCGAAAAATGAGCTGCTGGGAGCCGCAGCTGCCATTGAAGCTGCCGCTAAGAAACTAGAGCAGCTCAAACCCCGGGCCAAACCCAAGgtCAAGGCAATCCCAGCAAACGCAGTGGATGATGGACAGTGGTCACAGGGTCTCATTTCTGCTGCACGTATGGTGGCTGCAGCTACGAACAACCTGTGTGAAGCGGCTAACTCTGCGGTTCAGGGTCACGCCAGCGAGGAGAAACTCATTTTGGCCAAACAGGTGGCAGCATCCACCGCTCAACTGCTGGTGGCCTGTAAGGTCAAGGCTGACCAGGACTCCCAGACCATGAAGAGACTGCAggcTGCAGGTAATGCCGTCAAGAGGGCGTCAGATAACCTGGTGAAGGCGGCGCAGAAGGCTGCGTTCGAGGCCCAAGATGATCAGGCCGTGATGGTGAAGAGCAAGATGGTAGGCGGTATCGCTCAGATCATCGCCGCTCAGGAAGAGATGCTCAGGAAGgagagagagctggaggaagcCAGGAAGAAGCTGGCCATGATACGACAGCAACAGTACAAGTTCCTGCCGTCAGAGCTCAGAGAGGACGGACAGGAACAGTGAGCCGCGCCAGAGACTAATCAGTGACATTGAGAGCTCGAGAAAAGTCATCAACGATATGCAATGAGTAAAAAGTGAACTATGTATCAGGATGtctattttaagtgttttgtttatttccgTCACTTTTTTGGAGAATTGCCATGCCAGCTTTATTGTTTAGTTGTATTTGGATAAAGCATATACAAATCCTTTTTAATgtctatattatttttcttcagtaCTAGATAGGTCAGATCAgcagtgtgtgttttgaaagctCGTGATCGTGGCAGGGGCCAAACAGTGTTTGTAAGCTTTTCAAGAcaaaatttgtactttttcaattttttttttttttttttttttttggcaatttttttGTGGCAATTTGGACCAGCAGTGCAATGATTAACTTTGCGTCGAAACAATTCACGGAGAAAACAtatcattttctaaataaaagaataataaagcTTTGAAATGTTACAATAGCATCTCCTGTTAATGTTTTGTCGATGTTTGCTTTTGTGACAACTTGGTCTGCTAGCGAATGATATCTTTTATAACGCATAAAAgccatattta

Function

GO:

id name namespace
GO:0007016 obsolete cytoskeletal anchoring at plasma membrane biological_process
GO:0007155 cell adhesion biological_process
GO:0001726 ruffle cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005925 focal adhesion cellular_component
GO:0005158 insulin receptor binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110427 lncRNA upstream 120014 3891891 ~ 3893020 (+) True G74626
TU110384 lncRNA upstream 154082 3854316 ~ 3858952 (+) True G74596
TU110376 lncRNA upstream 168522 3788757 ~ 3844512 (+) True G74589
TU110371 lncRNA upstream 244382 3768201 ~ 3768652 (+) True G74585
TU110243 lncRNA upstream 321624 3680422 ~ 3691410 (+) False cdc42se2
TU110489 lncRNA downstream 41222 4120864 ~ 4122658 (+) True G74667
TU110507 lncRNA downstream 71816 4151458 ~ 4153279 (+) True G74680
TU110508 lncRNA downstream 75405 4155047 ~ 4160317 (+) True G74681
TU110481 lncRNA downstream 85316 4164958 ~ 4176118 (+) True G74659
TU110513 lncRNA downstream 117890 4197532 ~ 4201390 (+) True G74686
XM_043250611.1 mRNA upstream 3664 4001799 ~ 4009370 (+) False hmgcs1
XM_043250610.1 mRNA upstream 3664 4002642 ~ 4009370 (+) True hmgcs1
XM_043250536.1 mRNA upstream 13096 3960041 ~ 3999938 (+) True map3k1
XM_043250323.1 mRNA upstream 77197 3912265 ~ 3935837 (+) False syk
XM_043250421.1 mRNA downstream 1941 4081583 ~ 4096903 (+) True tpm2
XM_043250420.1 mRNA downstream 1943 4081585 ~ 4093040 (+) False tpm2
XM_043250419.1 mRNA downstream 1944 4081586 ~ 4096903 (+) False tpm2
XM_043250418.1 mRNA downstream 1946 4081588 ~ 4093040 (+) False tpm2
XM_043250426.1 mRNA downstream 6094 4085736 ~ 4096903 (+) False tpm2
TU110241 other upstream 318438 3669023 ~ 3694596 (+) True cdc42se2
TU110245 other upstream 345126 3663944 ~ 3667908 (+) False zgc:113274
XR_006251933.1 other upstream 440914 3569278 ~ 3572120 (+) False LOC122352855
TU110065 other upstream 1232559 2777859 ~ 2780475 (+) True il11ra
TU110053 other upstream 1307695 2589145 ~ 2705339 (+) False cntfr
TU110461 other downstream 416932 4496574 ~ 4500100 (+) False LOC122352783
TU110851 other downstream 1038209 5117851 ~ 5120654 (+) False LOC122352404
TU110913 other downstream 1041847 5121489 ~ 5123272 (+) False LOC122352404
TU110926 other downstream 1158786 5238428 ~ 5250137 (+) False LOC122352567
TU110925 other downstream 1164948 5244590 ~ 5250137 (+) True LOC122352567

Expression Profile