RNA id: TU110588


Basic Information

Item Value
RNA id TU110588
length 1810
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G74742
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 3997901 ~ 3999787 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGAACCCAGAGATGTATTTGCACAATAAAAAGGAGCTAATAAGTTAGCCCTTAAGCCCTGGAGatctttgaggaaaaaaaaaagagagatataaaattataataaaagaatatatatttatatatatttatatatatatatatatatatatttatatatatatataattatttatatatattgagaAAGTGAACTTTGGTAGAAGAAAATTCTAGAGGACACCTGAGGTAGAAAAGACTGGAATAAAACAGCAATAGACAATCTTCACATAAAAAGTACCACCAAGTGACAAGAAACGGCATCCTTTCATACAGGTCAGTTCAGCCCagatcaaaaaaaacaaaaaaagcccaTGAAATAACGGAATAATAACATACAGTGAGCAACAAGCTGATTGAGATGATCAAACTGATAGGAAATGACAGAAGATGTGGAAAAACTCAAGTAATACTGATTAGAATTTATGAAGCTGACTGAAACGGACACCTTTCCAGTATATAAAAAGACAAGAGTGCATAACTTTAAAGCTTTTATAAAggcataggaaaaaaaaaaaaaaaaaaaaaaaaatagcaggagtcaagtaaaatacatttagctaccaaaattcatatttacatcTGAACTCTTCAAGCTTGATCAGCCTGTATTCCacaatttagcattaaataactttacttttaaaaatagttttcgaAATGGTCGCATTTAAAACTCGGAGATTTGCATGAAGGGATCCCAAATAAGGAAATTCGATGTTCTTgtaaatttgtcaaaaacatcTCAACCTAAACGGCAACAACACTTGAAGAGCTACAGTTCATACACCGGACATGTCTTTAGAACATGCGTAATGTTAATTGTTTTTGGGAAAACAACGTTTACGAGCACTAATATCATGAGCTAAATATGATCCCTCCACCGAAATGTTCAACAGCGTGAAATAACACATGAGGAAATACTCAGGTACAGGTACTGAATACTCCATTAGGAAGCTTGATCATTTACAAAACGCCTGTCGGATTTTCGTGAACGTGAACAGAACAGCACCAAAAACATGGCTGAGCGATTAACAGCTGAAATCACAACATTAAAACCGAAATGGAGTTGGGAGATCAGAAATGATGTTCCAGTGAGACTTTCCAACATAGAAAAAAATCGGAGTTACAGACGCACATCACAGTCTAAAATTGGGTGATAGCTTTGGAAAGGTTCCCGATTACACCCGAACAAGTAAAAGCAGACATTTATACACAAGATCTCCATTCAGAAACGAAACGAAAAGCGAACCATACCGGCATCATAAGCATTCACATTCAGCGGTGTGCTAGTTCAACTAGCATAGATTTGCCGTTCACCAAAACACATTCGCAAATCATGAGGCCTGACACGAACACACTAAAACCAAAAGCGTTAAAATGCGAACAGGTGAACTGATCTCTGCCTCTCTGTTATTAAAGAAGACCCGATTCAAAAAGGTAAGCAGAGAtctgaacttaaaaaaaaaaaacacagacatggCACTTTTATAAAGACTCTCATAATGTGCTAGCGGGTTTTTGCATCAGGTATTGAGGCTACAGCATTTAGGGTCCTCTTCGGTGACTGTGGcaagaaaaagacagaagagCACGACAGCAGGATGAGCTTCAGTAGTCTGAGGTCCCGCTCTACCAGCTGTGGCGGAAGACGGGGTGCTTCAGCAGCTCTCGGGAGGGCGGCCGGTCCGAGGGCTGGAGCTCCAGACAGCGCAGGGTGACGTCCCGCAGGCCCGGAGACAGGTGCGGCGGGATCGTGGGCGCTGTGGT

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110585 lncRNA downstream 4467 3992187 ~ 3993434 (-) True G74739
TU110414 lncRNA downstream 163531 3780059 ~ 3834370 (-) True G74614
TU110415 lncRNA downstream 165809 3831602 ~ 3832092 (-) True G74615
TU110425 lncRNA downstream 169873 3827125 ~ 3828028 (-) True G74624
TU110406 lncRNA downstream 173305 3821391 ~ 3824596 (-) True G74609
TU110583 lncRNA upstream 7443 4007230 ~ 4009374 (-) True G74737
TU110643 lncRNA upstream 81789 4081576 ~ 4530616 (-) False G74769
TU110644 lncRNA upstream 81789 4081576 ~ 4532236 (-) False G74769
TU110645 lncRNA upstream 81789 4081576 ~ 4530616 (-) False G74769
TU110647 lncRNA upstream 81789 4081576 ~ 4530616 (-) False G74769
XM_043250328.1 mRNA downstream 85159 3905614 ~ 3912742 (-) True LOC122352741
XM_043250920.1 mRNA downstream 93778 3891642 ~ 3904123 (-) True pdzph1
XM_043250199.1 mRNA downstream 118381 3843692 ~ 3879520 (-) True pam
XM_043250416.1 mRNA upstream 106221 4106008 ~ 4115776 (-) True ca9
XM_043250417.1 mRNA upstream 119591 4119378 ~ 4126532 (-) True dcp2
XM_043250373.1 mRNA upstream 131955 4131742 ~ 4153288 (-) True chd1
XM_043250428.1 mRNA upstream 155617 4155404 ~ 4164114 (-) True macir
XM_043250429.1 mRNA upstream 155617 4155404 ~ 4164095 (-) False macir
XR_006251921.1 other downstream 85159 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other downstream 85159 3905614 ~ 3912742 (-) False LOC122352741
XR_006251926.1 other downstream 390113 3601612 ~ 3607788 (-) False hnrnpd
TU110254 other downstream 657972 3337388 ~ 3339929 (-) False LOC122353137
TU109952 other downstream 1800590 2194115 ~ 2197311 (-) False LOC122352692
TU111527 other upstream 2538747 6538534 ~ 6540926 (-) False si:ch211-113d22.2
TU111553 other upstream 2628638 6628425 ~ 6631157 (-) False sprn2
TU111552 other upstream 2628643 6628430 ~ 6631157 (-) False sprn2
TU111694 other upstream 3177537 7177324 ~ 7180821 (-) False G75454
TU111693 other upstream 3177964 7177751 ~ 7180821 (-) True G75454

Expression Profile