RNA id: TU110605


Basic Information

Item Value
RNA id TU110605
length 2755
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G74757
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 4126895 ~ 4130011 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTCCCAGAAAATAGAAAGGGAACCAGGAGAGGAAAATATCAGCGAAGAACTCCGCGATGCTGAAGACGCCGTAAACCACCCAGTAGGTCAGCCATTTGGTGTCGTCGTCTTTGGTCGCGCTCTCAATGGCTTTGATTCTGCAAACACACGAGACCGACATGACACTTTCTCTACACGCTGACTGCCATTTCAGATTCACTAATAATAGATAAAGAATCTGATTGTTCGTCCAGAGCATTAGATAAATGCTCGTCTTGCGAGAAGACCAGGGAAACTGATATTTTAACCCTGTAAGCctaacatataaaataacagtcataaagtcatatatacataacagtcatatatatatacacacacacacacacacacatatatatatatatatatgtgtgtatgtatatatatatatatacacacacacacatatatatatatatatatatatataaaaacaaatatttttcttaaatacatgcgtttcagtgtttatataaatttaattgtaGGCCAAAACATGATTCAATACAATACTACAATGATTGAGAGAAAAGCAAATAGATAAAACATTACTCAATaatttttgatacatttaaacaaacaaaaaaaaaaagaatgctttaGTCTAATAAATGATCTTCTTgatattttactaataatatgactgcattacatttactttattctAATCAGTAAAGATTGGATGGCAAAAAGACACTTAAAGGTGGACGTTTTTTCAGTTAAACTCGAGGGCTTTTTACTATTAGTAAGAAGGTGTGTAGTTCATTGTGTAAGACAGGTTTAACAGCCAGGTTTTGATCATGTTGATAAAGTAAAACTGGAATTTACACACACCTCCATAATCACATGGGTAACTAGCTGAAATCTGAAGGTGCTTCGAGTGCCCcgtgaaaaggtttttttgtttagcgAGTTAAACAGCGAAACTGTGGGTGTTTGACATGCAACAAAACCTCATTGATTCCTGCGCGTCAAGCCAACACATTTCAGCTTCCTCATGACCACGTGTGCTTGCGAAGAAAAGCATTATATAAAGTCACCCTGTCTCCTCGGGCTAGATTCATAGTTTCTATTAAATTCCAAAAGCTGGACCGTTTCGGTTATATTCGAAGAAAGATTTTAAGTGTGATTTTGGTTTTATGTAATAGTTCAATTTTGCGTTTAAACGGTCCATTATCTAATACAGAAAAGAGTCGCGAACAACTGCAGATCAGACCAGTAGTGAGGTTCTGTTCTGAATAAATCGACGACATAAAAGATGAAATGACTGCATTAGGACCCTTGATTGATCAGCATCAGCGTTGtactgaataaatgtaatgattgTCAATTAAGCAATAGGAGGACAAATCTGTGTCTGTGATCATGCAAATAGATTTTGAAAACCTGTtgattacactttattataagGTGTCATTCTTACAGTGCAATTTTAAGtactgtttaatattaataactacatgtacttactatatgggaTCGGGACGAGACAATAAACCTGGTCTCGCTGTACTTACCTTTCATTGGATGCCTAATTTAATGCCTGTATAACAAAGAGGCATTTGcaaattagattattattaatttcattaacacTGCAAATGAAAATTAGTTTGCATAAATTAGATTCTTTATGTATTCTTTACCATGATATGTGTGCTTGTTCTTCTTACGTGTATACACAAGCAGTAAATCAGATATTAATATACGCTTTTTTACAAcatcatattaaaatcatactTAAATGTTAACGAAAATTGAAATTTCttccattttgtttaaaagccGTTGATGGCATATTGTCAAATGTCTATTTCTGTGTGTGACGCTTCATTGATGgacaattaacataaaaatatgtatctttAACTTGTAACGTGTTGGTGTATTAAGCAATGGCTTCTGCCTACTTTTGTTCACCGAGTCGTCTCGTTAAAAACTGTtcaagcttaaaaaaatatgaaggaaactcattttcatataaatgttaaatatgcacATTCATTTTCGATTTAGTACTTGCGTGATTGCATGAGCAGAGATATTTGAAGCAAAACACTTACAATAACCATACGAACAAGTACAAAATGTCGAAATAACTGAATTTCTTTTAACGTTACAGCGTGCACTTCCTACTGCGTGCCACTGCTGCGATGACGTCAATACGTCGCAACCGCGAAGATGACGTAATAAACTGCCGAACgatgccaattttttttttttaaaagatctaTTAACGTTGCAGCTCCAACTCACGATATGTACGCAGGATAGACGAATCCGATTAGATTACAGAGCAGAGAAGCGCCGTATCCGATCACCAGATAAACCGCAATGAACGCGATGACAgctgaaagacaaaagacagTATGTCAGATCTGTCCGGGCTTCGCATATAATATGAAAGCGCAATCGTGCTTCAACAGACTTAAAAGCATTATGCGACGTGTCCGACATTACAGCACACATGTGTTCCTGGTTATAATAGCTTCTTCCATCAACACTCACCATACGCGATGTAGGACCTGTTTACTCCGGTCCTCGCCTCGATCTTCGCCAGCACTTCCGTCATCAAATTTTTCTCGTAAAGAAACTTATCGAAGCGTTCTTTCAGCCCGTGCGCCATGATGTGTCTGGATTGGTGATGGATTTATTGcgatatgaaataaaaatgatatgaaCAGCAGCTCTACTCCTCAGCTCGCGCTGACACGCTGAGGGTGTGACGTCACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110583 lncRNA downstream 117521 4007230 ~ 4009374 (-) True G74737
TU110588 lncRNA downstream 127108 3997901 ~ 3999787 (-) True G74742
TU110585 lncRNA downstream 133461 3992187 ~ 3993434 (-) True G74739
TU110415 lncRNA downstream 294803 3831602 ~ 3832092 (-) True G74615
TU110425 lncRNA downstream 298867 3827125 ~ 3828028 (-) True G74624
TU110601 lncRNA upstream 554 4130565 ~ 4131444 (-) True G74755
TU110602 lncRNA upstream 554 4130565 ~ 4131444 (-) False G74755
TU110679 lncRNA upstream 168725 4298736 ~ 4323950 (-) True G74791
TU110687 lncRNA upstream 233393 4363404 ~ 4364758 (-) True G74796
TU110610 lncRNA upstream 365049 4495060 ~ 4496658 (-) True G74762
XM_043250417.1 mRNA downstream 363 4119378 ~ 4126532 (-) True dcp2
XM_043250416.1 mRNA downstream 11119 4106008 ~ 4115776 (-) True ca9
XM_043250328.1 mRNA downstream 214153 3905614 ~ 3912742 (-) True LOC122352741
XM_043250920.1 mRNA downstream 222772 3891642 ~ 3904123 (-) True pdzph1
XM_043250199.1 mRNA downstream 247375 3843692 ~ 3879520 (-) True pam
XM_043250373.1 mRNA upstream 1731 4131742 ~ 4153288 (-) True chd1
XM_043250428.1 mRNA upstream 25393 4155404 ~ 4164114 (-) True macir
XM_043250429.1 mRNA upstream 25393 4155404 ~ 4164095 (-) False macir
XM_043250376.1 mRNA upstream 37011 4167022 ~ 4201387 (-) False ppip5k2
XM_043250383.1 mRNA upstream 37011 4167022 ~ 4201386 (-) False ppip5k2
XR_006251921.1 other downstream 214153 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other downstream 214153 3905614 ~ 3912742 (-) False LOC122352741
XR_006251926.1 other downstream 519107 3601612 ~ 3607788 (-) False hnrnpd
TU110254 other downstream 786966 3337388 ~ 3339929 (-) False LOC122353137
TU109952 other downstream 1929584 2194115 ~ 2197311 (-) False LOC122352692
TU111527 other upstream 2408523 6538534 ~ 6540926 (-) False si:ch211-113d22.2
TU111553 other upstream 2498414 6628425 ~ 6631157 (-) False sprn2
TU111552 other upstream 2498419 6628430 ~ 6631157 (-) False sprn2
TU111694 other upstream 3047313 7177324 ~ 7180821 (-) False G75454
TU111693 other upstream 3047740 7177751 ~ 7180821 (-) True G75454

Expression Profile