RNA id: TU110640


Basic Information

Item Value
RNA id TU110640
length 423
lncRNA type read_through
GC content 0.46
exon number 3
gene id G74768
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 4092043 ~ 4541781 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaggaagaaatttttacatttattacagcagCATGATAAAGTAAAGCAGCGGCGAGCACGTATGACACAGATGCTGCAGTTTAAGCGTCAACATTATGAAAGTCATTCAGCTAAACGTTGGACTTATCGAACACCTCAGAATGGACGGTCATCGTGAGAACGCACAATGCAGACCATTCCACACAAAGACAGGAGAGAAAGACTAAACACGAAACTGGAACAACGTCTGATGTCCGATTCACGGTCACATGgcgaaaaacagaaaagaacacGGAAGAAGAGgtggaggatgaggaggagacCGAGAGAGCGCTTAGAGAGTGGTCATGTCATTTAGAGCCAGATCCAGCTCCTCGCTGAGGGCTTTGGTTTTCTCAAGCTTTGCCACAGACCTTTCAGCAAACTCGGCACGAGTTTCAGcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110583 lncRNA downstream 82669 4007230 ~ 4009374 (-) True G74737
TU110588 lncRNA downstream 92256 3997901 ~ 3999787 (-) True G74742
TU110585 lncRNA downstream 98609 3992187 ~ 3993434 (-) True G74739
TU110415 lncRNA downstream 259951 3831602 ~ 3832092 (-) True G74615
TU110425 lncRNA downstream 264015 3827125 ~ 3828028 (-) True G74624
TU110726 lncRNA upstream 137922 4679703 ~ 4680232 (-) True G74819
TU110773 lncRNA upstream 297436 4839217 ~ 4840661 (-) True G74846
TU110793 lncRNA upstream 349813 4891594 ~ 4897087 (-) False G74858
TU110794 lncRNA upstream 349813 4891594 ~ 4897087 (-) True G74858
TU110797 lncRNA upstream 362196 4903977 ~ 4904469 (-) True G74861
XM_043250328.1 mRNA downstream 179301 3905614 ~ 3912742 (-) True LOC122352741
XM_043250920.1 mRNA downstream 187920 3891642 ~ 3904123 (-) True pdzph1
XM_043250199.1 mRNA downstream 212523 3843692 ~ 3879520 (-) True pam
XM_043249807.1 mRNA upstream 48507 4590288 ~ 4627041 (-) True LOC122352396
XM_043251103.1 mRNA upstream 281683 4823464 ~ 4867579 (-) False LOC122353167
XM_043251099.1 mRNA upstream 281683 4823464 ~ 4867579 (-) False LOC122353167
XM_043251098.1 mRNA upstream 281683 4823464 ~ 4867579 (-) False LOC122353167
XM_043251100.1 mRNA upstream 281683 4823464 ~ 4867578 (-) False LOC122353167
XR_006251921.1 other downstream 179301 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other downstream 179301 3905614 ~ 3912742 (-) False LOC122352741
XR_006251926.1 other downstream 484255 3601612 ~ 3607788 (-) False hnrnpd
TU110254 other downstream 752114 3337388 ~ 3339929 (-) False LOC122353137
TU109952 other downstream 1894732 2194115 ~ 2197311 (-) False LOC122352692
TU111527 other upstream 1996753 6538534 ~ 6540926 (-) False si:ch211-113d22.2
TU111553 other upstream 2086644 6628425 ~ 6631157 (-) False sprn2
TU111552 other upstream 2086649 6628430 ~ 6631157 (-) False sprn2
TU111694 other upstream 2635543 7177324 ~ 7180821 (-) False G75454
TU111693 other upstream 2635970 7177751 ~ 7180821 (-) True G75454

Expression Profile