RNA id: TU110687


Basic Information

Item Value
RNA id TU110687
length 1027
lncRNA type intronic
GC content 0.32
exon number 2
gene id G74796
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 4363404 ~ 4364758 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gacaaaatgacttttttttcacattacattGTGCATGCATCTTTACTGCCATGTGAACTGAGGTAGTGATCAAATTCTGCTGAAATGTTCTCTCCCTCACACAGCTCATTCAGCTGATTCAAGTAAGCTAGTAGATTTATAAACCTgctctgcaggccctctcattCATATCAGCCCCACATTCGTTCAGAAAATAAATCCTACTTCACTTGACCACATTATGCTCCAGCTCACAGACAGTGGCACAATGAGACCAATGATGCCCACAAACGCATAATTAGTTGTAATTGCtgtaataatatagtaataatagttgTACATTTCAGTCCTTACAAATTTTGAGTTAAATTAGCTGTGTTTATTGCACAAAACCTAAAGGGACACACAGAAAATGAAGTATACCTtaagtttcaaaatatatatactgtataatgagTGCTTTGTAGCTTGGTGCAGTTTTGTAGCAGCTGCATATGTCAGTGGCTATGTTTATATCGACACCTTTTGTTTCAGTTGAAGTTAAATCATtaaggtggccttaactactatataCTTTGTTGCTATTCAGGTGAGATATGATTGAAATATGATTGAAATTTCATTTGGATTAAGCTGTAACAtggaaaccttaaaataaaatgtaaccaataaactgtaatttggtacaattaaattacagttgcttaaatgaaaatatgaaatattacaaagggtgttacatctgaatatttaattgatttctttCCCTGACACCAATGTTCCAGGAGTTTAGGACACATATTTGTTTCCTATATTGTTTTATgtgttatactttattttttaagaataactgtttttttttactatccaTAGCATCATAACATTTAAACTATATCtcatgatttaaaatatgtgctttaaaatgaaattattttaatgttaattcaaGTGCTGGAGGATTTTAAGACAGCAGTCGACGTGGAGCACTGCCTGctgtaaatgttgaaaaaaatgattaacatttgagaaaacatttgttataaatTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110679 lncRNA downstream 39454 4298736 ~ 4323950 (-) True G74791
TU110601 lncRNA downstream 231960 4130565 ~ 4131444 (-) True G74755
TU110602 lncRNA downstream 231960 4130565 ~ 4131444 (-) False G74755
TU110605 lncRNA downstream 233393 4126895 ~ 4130011 (-) True G74757
TU110583 lncRNA downstream 354030 4007230 ~ 4009374 (-) True G74737
TU110610 lncRNA upstream 130302 4495060 ~ 4496658 (-) True G74762
TU110694 lncRNA upstream 145788 4510546 ~ 4510942 (-) True G74803
TU110726 lncRNA upstream 314945 4679703 ~ 4680232 (-) True G74819
TU110773 lncRNA upstream 474459 4839217 ~ 4840661 (-) True G74846
TU110793 lncRNA upstream 526836 4891594 ~ 4897087 (-) False G74858
XM_043250414.1 mRNA downstream 113461 4241301 ~ 4249943 (-) True sh2d4a
XM_043250415.1 mRNA downstream 114397 4241301 ~ 4249007 (-) False sh2d4a
XM_043250390.1 mRNA downstream 162016 4169537 ~ 4201388 (-) False ppip5k2
XM_043250389.1 mRNA downstream 162016 4169537 ~ 4201388 (-) False ppip5k2
XM_043250388.1 mRNA downstream 162020 4167022 ~ 4201384 (-) False ppip5k2
XM_043249807.1 mRNA upstream 225530 4590288 ~ 4627041 (-) True LOC122352396
XM_043251103.1 mRNA upstream 458706 4823464 ~ 4867579 (-) False LOC122353167
XM_043251099.1 mRNA upstream 458706 4823464 ~ 4867579 (-) False LOC122353167
XM_043251098.1 mRNA upstream 458706 4823464 ~ 4867579 (-) False LOC122353167
XM_043251100.1 mRNA upstream 458706 4823464 ~ 4867578 (-) False LOC122353167
XR_006251921.1 other downstream 450662 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other downstream 450662 3905614 ~ 3912742 (-) False LOC122352741
XR_006251926.1 other downstream 755616 3601612 ~ 3607788 (-) False hnrnpd
TU110254 other downstream 1023475 3337388 ~ 3339929 (-) False LOC122353137
TU109952 other downstream 2166093 2194115 ~ 2197311 (-) False LOC122352692
TU111527 other upstream 2173776 6538534 ~ 6540926 (-) False si:ch211-113d22.2
TU111553 other upstream 2263667 6628425 ~ 6631157 (-) False sprn2
TU111552 other upstream 2263672 6628430 ~ 6631157 (-) False sprn2
TU111694 other upstream 2812566 7177324 ~ 7180821 (-) False G75454
TU111693 other upstream 2812993 7177751 ~ 7180821 (-) True G75454

Expression Profile