RNA id: TU110811



Basic Information


Item Value
RNA id TU110811
length 309
lncRNA type inter_gene
GC content 0.62
exon number 1
gene id G74873
representative True

Chromosome Information


Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 4949549 ~ 4949857 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CCCTCCTCGTTACTGTCATcttcaccccgtcctttattcgccgcccttcaccaggctcccgacgggagtgggtgtgttcgagaggaggggcgtggtattgttcaggtctggcggcgtgtgacgaggcataCCTGAAGTGGatttagcctcgttaccgtcgccgttaaatgccgtacgcgcctctcctcgggagaccggtctcttcccccgtgcatgcacgctggtgtcctcgtgggtccagaaagggtgcgcgatggacctcaccccgccgtccgagaagtgctcatcccactctgccgcccggagcaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU110809 lncRNA upstream 8247 4940998 ~ 4941302 (+) True G74871
TU110808 lncRNA upstream 21410 4927879 ~ 4928139 (+) True G74870
TU110806 lncRNA upstream 21827 4927495 ~ 4927722 (+) True G74868
TU110735 lncRNA upstream 126587 4822388 ~ 4822962 (+) True G74824
TU110715 lncRNA upstream 269317 4679694 ~ 4680232 (+) True G74814
TU110824 lncRNA downstream 50825 5000682 ~ 5002442 (+) True G74882
TU110831 lncRNA downstream 69339 5019196 ~ 5020801 (+) True G74889
TU110834 lncRNA downstream 69339 5019196 ~ 5020406 (+) False G74889
TU110833 lncRNA downstream 69484 5019341 ~ 5020406 (+) False G74889
TU110849 lncRNA downstream 124071 5073928 ~ 5074206 (+) True G74902
XM_043250038.1 mRNA upstream 34934 4912471 ~ 4914615 (+) True hint1
XM_043250036.1 mRNA upstream 43281 4891590 ~ 4906268 (+) True ppp2cb
XM_043251097.1 mRNA upstream 61980 4866714 ~ 4887569 (+) False LOC122353166
XM_043250596.1 mRNA downstream 82297 5032154 ~ 5034484 (+) True LOC122352870
XM_043250597.1 mRNA downstream 82297 5032154 ~ 5034484 (+) False LOC122352870
XM_043250594.1 mRNA downstream 85176 5035033 ~ 5038505 (+) True LOC122352868
XM_043250593.1 mRNA downstream 88989 5038846 ~ 5045120 (+) False LOC122352867
XM_043250592.1 mRNA downstream 88993 5038850 ~ 5045538 (+) True LOC122352867
TU110461 other upstream 449449 4496574 ~ 4500100 (+) False LOC122352783
TU110470 other upstream 829102 4075338 ~ 4120447 (+) False LOC122352388
TU110458 other upstream 902595 4043587 ~ 4046954 (+) False LOC122352388
TU110456 other upstream 906855 4013060 ~ 4042694 (+) False LOC122352388
TU110241 other upstream 1254953 3669023 ~ 3694596 (+) True cdc42se2
TU110851 other downstream 167994 5117851 ~ 5120654 (+) False LOC122352404
TU110913 other downstream 171632 5121489 ~ 5123272 (+) False LOC122352404
TU110926 other downstream 288571 5238428 ~ 5250137 (+) False LOC122352567
TU110925 other downstream 294733 5244590 ~ 5250137 (+) True LOC122352567
TU110943 other downstream 306981 5256838 ~ 5258823 (+) True G74965

Expression Profile