RNA id: TU110831


Basic Information

Item Value
RNA id TU110831
length 1606
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G74889
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5019196 ~ 5020801 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGAGCGGAATGTGTGTAGACCTTTAATTGCTGTCCTGATGATACgacagaaaaacagacaatGAGGCGTTTATGGTTACTGGCTACGACTGAGGAAGTAACCGCTTGAAACACCACCGAAGAGGTTAATGGTATCACAAGgcctaaaaataacaacatccTTCAAGTTAAAATAACATGCTTCATGCCTTACAATAACAACATGTTTCATGtctcttttattattgttaagaaCGACTACGTTCATTTCTGGATTGTGAACAccgcataaaaaaatattagttacGTGTGattatttcaggttttttttctttcagattgaTTGAACTGTTCTAAAAACATCAGTGGACAGATTAACAAAATATCCTTAAGATAAAATCCTTCATAGCTCctgttttcttcttattttttaacCTAAGAAGGATTAAAAGAATTTAGAGTTGTATCATTTGCTCAGCAGTagatcctctgtagtgaatgggtgccgtcagaatgagagtcaaaacagctgataaaaacatcagaataatccacacgACTTGAGTCTATCAGTTAATGCGTTATGTAATTCATATAAACAGATCTATTATTAGGGCACTTCTGGACATAATACATAAGCCCTATAATAAAGTTTCCTCCAGTGAAAACATCCATCTCCTGTCGTCCTCTCTaatcaaaatccaccaacatattattattcatactaATCTGTGCACATTCTCATGTTTTAGACAAGGCTGGAGGACGTTATGGATTATGAACACATATTGTGGCCAGAAGTCatgatttaaagttaaaatgccataataatgcatttgtttcttacaaacccAAAGCTTTtaacttcacaagatgttaattgatgtttttaatcagctcttTGGGactctcatcctgacggcaccccttcactgcagaggatccattggtgagtaAGTGAAATAATGTtgaatttctccaaatcggCTCTGGTGAAGAACAAAGTCCTCTATATcacggatggcctgagggtgagtacattttcagtcatttttttttatttttaggtgaactaatTCTATATGAATCTTTCAAGACTTGCCCTTAAGTACATCCTTACAAACTTTACATTTAGTATACCTGCTAACTTCTCTCCTAAGAAGATATTCAGGAATGTTCCTGGTGTTTTTAAATCACAGGATACAGTGAAGAACAGATCAGAAAGCGCAGTCCGGCAAATTTGATCTCCAAATAAAAGGGACAAATGATTAAacgcaaaaatatatttttttcaggcaaacataaaaaaaaaatttctgaaAATGCCTCTTCTGGTCAGATATATTGTGCTTATAGAGCGGAGGACTTTGCCCCCAGAAGCAAGTCTAATGGTGTGTCCAAAACAATTTCTCTCATAGTTCGTCTCGAGCTGTTCTGTCCAGAGGAGACTGGAGCACATCTGAGTTTTGGGCCTCTGTGCTGATTTCAGCCTGTTCCCGGGTTTTACCCGAGCGCTTCCTGTCCCAGTCTGTGCGCACTTTCTCATTGTCCCACACAGTGGAGGTTTCTGTGTCACTGATGTACCCAGGTTCACCCGTGTAATGTGTAGGAAACACAAGCAAGGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110824 lncRNA upstream 16754 5000682 ~ 5002442 (+) True G74882
TU110811 lncRNA upstream 69339 4949549 ~ 4949857 (+) True G74873
TU110809 lncRNA upstream 77894 4940998 ~ 4941302 (+) True G74871
TU110808 lncRNA upstream 91057 4927879 ~ 4928139 (+) True G74870
TU110806 lncRNA upstream 91474 4927495 ~ 4927722 (+) True G74868
TU110849 lncRNA downstream 53127 5073928 ~ 5074206 (+) True G74902
TU110855 lncRNA downstream 66479 5087280 ~ 5087591 (+) True G74906
TU110857 lncRNA downstream 76843 5097644 ~ 5098564 (+) True G74908
TU110863 lncRNA downstream 86984 5107785 ~ 5108114 (+) True G74914
TU110852 lncRNA downstream 96065 5116866 ~ 5117649 (+) False LOC122352404
XM_043250038.1 mRNA upstream 104581 4912471 ~ 4914615 (+) True hint1
XM_043250036.1 mRNA upstream 112928 4891590 ~ 4906268 (+) True ppp2cb
XM_043251097.1 mRNA upstream 131627 4866714 ~ 4887569 (+) False LOC122353166
XM_043250596.1 mRNA downstream 11353 5032154 ~ 5034484 (+) True LOC122352870
XM_043250597.1 mRNA downstream 11353 5032154 ~ 5034484 (+) False LOC122352870
XM_043250594.1 mRNA downstream 14232 5035033 ~ 5038505 (+) True LOC122352868
XM_043250593.1 mRNA downstream 18045 5038846 ~ 5045120 (+) False LOC122352867
XM_043250592.1 mRNA downstream 18049 5038850 ~ 5045538 (+) True LOC122352867
TU110461 other upstream 519096 4496574 ~ 4500100 (+) False LOC122352783
TU110470 other upstream 898749 4075338 ~ 4120447 (+) False LOC122352388
TU110458 other upstream 972242 4043587 ~ 4046954 (+) False LOC122352388
TU110456 other upstream 976502 4013060 ~ 4042694 (+) False LOC122352388
TU110241 other upstream 1324600 3669023 ~ 3694596 (+) True cdc42se2
TU110851 other downstream 97050 5117851 ~ 5120654 (+) False LOC122352404
TU110913 other downstream 100688 5121489 ~ 5123272 (+) False LOC122352404
TU110926 other downstream 217627 5238428 ~ 5250137 (+) False LOC122352567
TU110925 other downstream 223789 5244590 ~ 5250137 (+) True LOC122352567
TU110943 other downstream 236037 5256838 ~ 5258823 (+) True G74965

Expression Profile