RNA id: XM_043249821.1


Basic Information

Item Value
RNA id XM_043249821.1
length 1782
RNA type mRNA
GC content 0.54
exon number 11
gene id LOC122352404
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5116866 ~ 5123373 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGGCACTATGGCATCATATTCGTCACCGAAACACCATACCCTCCATCTTTGCACAAACCGTGGCTCGGCACCCGGACAAGCCCGCGCTTGTGTACGAAGCCACAGGAGAAACGTGGACTTTCTCCCACTTAGATCAGATCTCCAATGCTGTGGCCCAATGGGCTCTGAGCCAGGGCTGGACCTCAGGAGATGTGGTGGCCCTGTTCATGGAGAGCCGGCCGCTCCAAGTGGCCCTCTGGCTGGGCCTGGCCAAAGTAGGCGTCGAGGCCGCTCTGATCAACTTTAACCTCCGACGGGATTCACTCCTGCACTGCATGGGGGTGTCAGCATCCCGAGCGCTGGTTTTCGGAGCAGAGCTAGCAGACGCGGTGTATGAAGTGAGCTCCTCTTTGAGTGAGAGTATGGTGCGGTTCAGCACGGGAGACCTCAGACCAGACCAGATGGCCGCTCTGAAATGTCACCCCCTTGACTCCATTCTGGCATCGGCCCCTCGAAACCCACCACTCTGTACCGTGTCCAAGGGCTTCAATGATCGTTTGTTCTATATCTACACTTCTGGCACCACAGGACTCCCAAAAGCTGCTATAGTGGTGCACAGTCGATATTACAGGATTGCTGCTTTCGGCTACCATTCTTTTCGAATGCAGCCAGATGACATTATCTATGATTGTTTACCCCTCTACCATTCAGCAGGTAATATTATGGGGGTTGGCCAGTGTTTGATTCACGGTATAACCGTGGTGGTCAAGAAGAAGTTCTCCGCGAGTCGCTTCTGGGAAGACTGCATCAAACATCATCAGATGGAGAGATTTAAGTCATTCATTCGTCTGTCTGTGCTTTCAGGGATCACCGTGGTGCTGAGGAGGAAGTTTTCTGTGTCTGAGTTTTGGAACGACTGTCGGGAACACGAGGTGACGGTCATCCAGTACATCGGAGAGGTCATGCGTTACTTGTGCAACGCACCCAAGAGCGAGCGTGAGCGGGATCACCGTGTGCGTCTGGCTCTGGGGATCGGCATCCGAGCGGACACATGGGAGGACTTCCTGCGCCGCTTCGGGAACGTGTGCATCTGTGAGTGCTACGGAGCCACCGAAGGAAACATCGGATTCATCAACTACACCGGGAAGACCGGCTCCATCGGGAGAGTGACCGCCATCCACAAGatgctCACCCCTTACGCCTTCATTCGTTTTAATCCGGAGACGGAGGAGCCGCTGCGAGACTCTAACGGACTCTGTGTGGAGGTCTCTCCAGGTGAAACCGGGCTGCTGGTGGCAAAGATCAATAAGATCGCTCCGTTCAGTGGTTACGCTAAAAACCCGGCGcaaacagagaagaagaagctgaggaACGTCTTTAAGAGAGGAGATGTGTACTTCAACACCGGAGATCTCATATTAGCCGACCGCGACGGCTTCCTTTACTTCCAGGACCGCGTTGGAGACACGTTCCGATGGAAAGGAGAAAACGTGGCCACGACTGAAGTGTCTGAGGTTTTGCTGATGCTGGATTCTGTGGAAGCTGCAAACGTCTACGGTGTGAGAGTATCAGGTCATGAGGGACGGATCGGGATGGCAGCTCTCAAACTCAGAGACGGGAAGGAGTTTGACCGATCtgctacatacacacacctgaAGAAGCTCCTGCCGGCCTACGCCAGACCTCACTTCATCAGGatacaggtcacacacacacatgaacacacccAAGAACACTCCATAATACACacccatgaacacacacacacactcactgtctCACACACtatcactcacactctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110852 lncRNA upstream 200 5116866 ~ 5117649 (+) False LOC122352404
TU110863 lncRNA upstream 9735 5107785 ~ 5108114 (+) True G74914
TU110857 lncRNA upstream 19285 5097644 ~ 5098564 (+) True G74908
TU110855 lncRNA upstream 30258 5087280 ~ 5087591 (+) True G74906
TU110849 lncRNA upstream 43643 5073928 ~ 5074206 (+) True G74902
TU110922 lncRNA downstream 112226 5235599 ~ 5235955 (+) True G74958
XR_006251886.1 lncRNA downstream 114906 5238279 ~ 5239558 (+) False LOC122352567
XR_006251887.1 lncRNA downstream 114906 5238279 ~ 5239558 (+) False LOC122352567
TU110997 lncRNA downstream 259766 5383139 ~ 5385855 (+) True G74992
TU111012 lncRNA downstream 332998 5456371 ~ 5458861 (+) True G75007
XM_043250823.1 mRNA upstream 50312 5058497 ~ 5067537 (+) False LOC122352997
XM_043250822.1 mRNA upstream 50312 5059768 ~ 5067537 (+) True LOC122352997
XM_043250595.1 mRNA upstream 68700 5046251 ~ 5049149 (+) True si:dkey-210j14.3
XM_043250592.1 mRNA upstream 72311 5038850 ~ 5045538 (+) True LOC122352867
XM_043250593.1 mRNA upstream 72729 5038846 ~ 5045120 (+) False LOC122352867
XM_043251132.1 mRNA downstream 209637 5333010 ~ 5357455 (+) True sppl3
XM_043250805.1 mRNA downstream 288310 5411683 ~ 5446436 (+) True kcnn2
XM_043250803.1 mRNA downstream 288311 5411684 ~ 5446436 (+) False kcnn2
XM_043250804.1 mRNA downstream 288311 5411684 ~ 5444613 (+) False kcnn2
XM_043251123.1 mRNA downstream 323958 5447331 ~ 5451955 (+) True drg1
TU110461 other upstream 617749 4496574 ~ 4500100 (+) False LOC122352783
TU110470 other upstream 997402 4075338 ~ 4120447 (+) False LOC122352388
TU110458 other upstream 1070895 4043587 ~ 4046954 (+) False LOC122352388
TU110456 other upstream 1075155 4013060 ~ 4042694 (+) False LOC122352388
TU110241 other upstream 1423253 3669023 ~ 3694596 (+) True cdc42se2
TU110926 other downstream 115055 5238428 ~ 5250137 (+) False LOC122352567
TU110925 other downstream 121217 5244590 ~ 5250137 (+) True LOC122352567
TU110943 other downstream 133465 5256838 ~ 5258823 (+) True G74965
TU111017 other downstream 375308 5498681 ~ 5500304 (+) False ccl19b
TU111087 other downstream 437278 5560651 ~ 5562085 (+) True G75062

Expression Profile