RNA id: TU110857



Basic Information


Item Value
RNA id TU110857
length 893
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id G74908
representative True

Chromosome Information


Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5097644 ~ 5098564 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CTGCAGCGTCGAAACTTAAAATAACATGAGCATTAAATAGTGGCAGGGCAGACAAGGCAAAGTGCAGAAAGTTACAATTCGTGCGCTGAATATGACACTCAACAATATCATAACTAAATCATAAACAATGTCAGACTGTTTATGGAGAATGATGCATTATGGTGCAAATGAACaagtaaatatacattaatttacGTTCAAGTTAACAATCTTATTTTGTATCACGAGACTAGGAAAATTATGAACTGATGACAGCGGTGTTGGGCTtggtgatttttgttttaaacaaatagcaaaaaaataaattataaaaaaactaaaaaaactattattgaaAGGATTGGGGTAAGTGGTTCTTTTGAAAGCAAGTAAGatgcaaggatgctttaaagtGAGCAAGTGACAGTAATTCCTAACTTATATAATACGtgggtgtatgtatatacagtaagtCAACATCATGGTCATAAttgatataaataacattaataacaataggaagaaatgttttttgagcaccaactcagctattagaatgatttctgtaggagTGTGTGACTCAAAGACTGGCGTAATTTCACACTGGTAAATGACATCTTGCAATATCCACGATCTATATTTGCATTTCACGTAATGTAAACATAATATTgccattttactttattttgatcaaataaatgcagttttgacttcacaaaaatcttaccgaccccaGACGTTTGGCGGCAATGCATGTGAATCTtcttaattagaatttttaaataaatatatatattacagaagtcatttttttTTAAAAGATACACTTTTATAGTATAcccttgacattttttttttttaaaaagcatcttGTTTATAAAAGTTCCTCAGAGAAAGGAAAGTGAATGAGCGAA

Function


GO:

id name namespace
GO:0006955 immune response biological_process
GO:0002376 immune system process biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU110855 lncRNA upstream 10053 5087280 ~ 5087591 (+) True G74906
TU110849 lncRNA upstream 23438 5073928 ~ 5074206 (+) True G74902
TU110831 lncRNA upstream 76843 5019196 ~ 5020801 (+) True G74889
TU110834 lncRNA upstream 77238 5019196 ~ 5020406 (+) False G74889
TU110833 lncRNA upstream 77238 5019341 ~ 5020406 (+) False G74889
TU110863 lncRNA downstream 9221 5107785 ~ 5108114 (+) True G74914
TU110852 lncRNA downstream 18302 5116866 ~ 5117649 (+) False LOC122352404
TU110922 lncRNA downstream 137035 5235599 ~ 5235955 (+) True G74958
XR_006251886.1 lncRNA downstream 139715 5238279 ~ 5239558 (+) False LOC122352567
XR_006251887.1 lncRNA downstream 139715 5238279 ~ 5239558 (+) False LOC122352567
XM_043250823.1 mRNA upstream 30107 5058497 ~ 5067537 (+) False LOC122352997
XM_043250822.1 mRNA upstream 30107 5059768 ~ 5067537 (+) True LOC122352997
XM_043250595.1 mRNA upstream 48495 5046251 ~ 5049149 (+) True si:dkey-210j14.3
XM_043250592.1 mRNA upstream 52106 5038850 ~ 5045538 (+) True LOC122352867
XM_043250593.1 mRNA upstream 52524 5038846 ~ 5045120 (+) False LOC122352867
XM_043249821.1 mRNA downstream 19285 5117849 ~ 5123373 (+) True LOC122352404
XM_043251132.1 mRNA downstream 234446 5333010 ~ 5357455 (+) True sppl3
XM_043250805.1 mRNA downstream 313119 5411683 ~ 5446436 (+) True kcnn2
XM_043250803.1 mRNA downstream 313120 5411684 ~ 5446436 (+) False kcnn2
XM_043250804.1 mRNA downstream 313120 5411684 ~ 5444613 (+) False kcnn2
TU110461 other upstream 597544 4496574 ~ 4500100 (+) False LOC122352783
TU110470 other upstream 977197 4075338 ~ 4120447 (+) False LOC122352388
TU110458 other upstream 1050690 4043587 ~ 4046954 (+) False LOC122352388
TU110456 other upstream 1054950 4013060 ~ 4042694 (+) False LOC122352388
TU110241 other upstream 1403048 3669023 ~ 3694596 (+) True cdc42se2
TU110851 other downstream 19287 5117851 ~ 5120654 (+) False LOC122352404
TU110913 other downstream 22925 5121489 ~ 5123272 (+) False LOC122352404
TU110926 other downstream 139864 5238428 ~ 5250137 (+) False LOC122352567
TU110925 other downstream 146026 5244590 ~ 5250137 (+) True LOC122352567
TU110943 other downstream 158274 5256838 ~ 5258823 (+) True G74965

Expression Profile